| Id: | TF_ChIP-seq/ENCSR993DED |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR993DED [biosamplesummary="Homo sapiens HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF214" and target="ZNF214"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF214 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN703BMD|/analyses/ENCAN703BMD/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_internal_action: Released analysis {ENCAN703BMD|/analyses/ENCAN703BMD/} has in progress subobject document {7bd0b27e-1df1-45de-a3d1-314f4f6d1a0c|/documents/7bd0b27e-1df1-45de-a3d1-314f4f6d1a0c/} audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF466BVP|/files/ENCFF466BVP/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library with PBC2 value of 9.96. audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF673JCM|/files/ENCFF673JCM/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline have a rescue ratio of 3.08 and a self consistency ratio of 1.19. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF436CTX|/files/ENCFF436CTX/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline have a rescue ratio of 3.08 and a self consistency ratio of 1.19. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR993DED | float |
TF_ChIP-seq_ENCSR993DED |
TF_ChIP-seq ENCSR993DED [biosample_summary="Homo sapiens HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF214" and target="ZNF214"]
|
 |
[11.5, 1.09e+03] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF673JCM.bed.gz | 23.06 KB | 4ad00f66aa6f5b7479b917c1d5cac5a0 |
| ENCFF673JCM.bed.gz.dvc | 99.0 B | a4f2efb3ad41471234fba33d921a5f2a |
| ENCFF673JCM.tabix.bed.gz | 15.22 KB | fbd6b085e12de6fe58a432ee05bc8425 |
| ENCFF673JCM.tabix.bed.gz.dvc | 105.0 B | 554b15dbffa5cfc85d1c794c38004149 |
| ENCFF673JCM.tabix.bed.gz.tbi | 16.56 KB | 73dc6a9c1f2f13e8fcb532730e996379 |
| ENCFF673JCM.tabix.bed.gz.tbi.dvc | 109.0 B | 94690d21501406848e969ce698428a7f |
| genomic_resource.yaml | 3.69 KB | 3b65a3027da7446a05d29e3a3bd15983 |
| genomic_resource_original.yaml | 3.5 KB | 6f63ac0f23ca2a6f9fa6866b98127c16 |
| statistics/ |