type: position_score
table:
  filename: ENCFF673JCM.tabix.bed.gz
  header_mode: none
  zero_based: true
  format: tabix
  chrom:
    column_index: 0
  pos_begin:
    column_index: 1
  pos_end:
    column_index: 2
scores:
- id: TF_ChIP-seq_ENCSR993DED
  column_index: 3
  type: float
  desc: 'TF_ChIP-seq ENCSR993DED [biosample_summary="Homo sapiens HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF214" and target="ZNF214"]'
  histogram:
    type: number
    number_of_bins: 100
meta:
  summary: 'TF_ChIP-seq ENCSR993DED [biosample_summary="Homo sapiens HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF214" and target="ZNF214"]'
  description: '**status**: released


    **biological\_replicates**: Rep 1, Rep 2


    **summary**: genetically modified (insertion) using site-specific recombination
    targeting H. sapiens ZNF214


    **output\_type**: IDR thresholded peaks


    **audit\_internal\_action**: Released analysis {ENCAN703BMD|/analyses/ENCAN703BMD/}
    has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/}


    **audit\_internal\_action**: Released analysis {ENCAN703BMD|/analyses/ENCAN703BMD/}
    has in progress subobject document {7bd0b27e-1df1-45de-a3d1-314f4f6d1a0c|/documents/7bd0b27e-1df1-45de-a3d1-314f4f6d1a0c/}


    **audit\_warning**: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio
    of the number of genomic locations where exactly one read maps uniquely (M1) to
    the number of genomic locations where two reads map uniquely (M2). A PBC2 value
    in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3
    - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended,
    but > 3 is acceptable. ENCODE processed alignments file {ENCFF466BVP|/files/ENCFF466BVP/}
    processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline was generated from a library
    with PBC2 value of 9.96.


    **audit\_warning**: Replicate concordance in ChIP-seq experiments is measured
    by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR
    thresholded peaks files {ENCFF673JCM|/files/ENCFF673JCM/} processed by ChIP-seq
    ENCODE4 v1.5.1 GRCh38 pipeline have a rescue ratio of 3.08 and a self consistency
    ratio of 1.19. According to ENCODE standards, having both rescue ratio and self
    consistency ratio values < 2 is recommended, but having only one of the ratio
    values < 2 is acceptable.


    **audit\_warning**: Replicate concordance in ChIP-seq experiments is measured
    by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR
    thresholded peaks files {ENCFF436CTX|/files/ENCFF436CTX/} processed by ChIP-seq
    ENCODE4 v1.5.1 GRCh38 pipeline have a rescue ratio of 3.08 and a self consistency
    ratio of 1.19. According to ENCODE standards, having both rescue ratio and self
    consistency ratio values < 2 is recommended, but having only one of the ratio
    values < 2 is acceptable.'
  labels:
    reference_genome: hg38/genomes/GRCh38-hg38
    accession: ENCSR993DED
    status: released
    assay_term_name: ChIP-seq
    simple_biosample_summary: genetically modified (insertion) using site-specific
      recombination targeting H. sapiens ZNF214
    biosample_summary: Homo sapiens HEK293 genetically modified (insertion) using
      site-specific recombination targeting H. sapiens ZNF214
    replication_type: isogenic
    biosample_ontology: /biosample-types/cell_line_EFO_0001182/
    perturbed: false
    doi: 10.17989/ENCSR993DED
    date_created: '2016-03-29T17:49:40.702546+00:00'
    date_released: '2017-11-28'
    submitter_comment: ''
    target: ZNF214
