TF_ChIP-seq_ENCSR957FIZ
TF_ChIP-seq ENCSR957FIZ [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens UBTF" and target="UBTF"]
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| Id: | TF_ChIP-seq/ENCSR957FIZ |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR957FIZ [biosamplesummary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens UBTF" and target="UBTF"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens UBTF output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN917GNC|/analyses/ENCAN917GNC/} has replaced subobject file {1e678804-abbe-4d45-b357-29bd9185e034|/files/1e678804-abbe-4d45-b357-29bd9185e034/} audit_internal_action: Released analysis {ENCAN917GNC|/analyses/ENCAN917GNC/} has replaced subobject file {b2ffcea1-a749-48dc-87ec-c92365a5c4e3|/files/b2ffcea1-a749-48dc-87ec-c92365a5c4e3/} audit_internal_action: Released analysis {ENCAN917GNC|/analyses/ENCAN917GNC/} has replaced subobject file {25a2ab47-12e8-4c1e-87bd-30c226c71b1d|/files/25a2ab47-12e8-4c1e-87bd-30c226c71b1d/} audit_internal_action: Released analysis {ENCAN917GNC|/analyses/ENCAN917GNC/} has replaced subobject file {9dcaf771-b6fd-4b88-b94f-08cb8e256be1|/files/9dcaf771-b6fd-4b88-b94f-08cb8e256be1/} audit_internal_action: Released analysis {ENCAN917GNC|/analyses/ENCAN917GNC/} has in progress subobject document {b2cb380b-9a73-4850-9708-cba734307807|/documents/b2cb380b-9a73-4850-9708-cba734307807/} audit_internal_action: Released analysis {ENCAN917GNC|/analyses/ENCAN917GNC/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF119IDJ|/files/ENCFF119IDJ/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.89. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF119IDJ|/files/ENCFF119IDJ/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC2 value of 8.82. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF063UZG|/files/ENCFF063UZG/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.87. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF063UZG|/files/ENCFF063UZG/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC2 value of 7.98. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR957FIZ | float |
TF_ChIP-seq_ENCSR957FIZ |
TF_ChIP-seq ENCSR957FIZ [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens UBTF" and target="UBTF"]
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[10.1, 857] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF810LSF.bed.gz | 691.69 KB | 1e53fcd71fc751308ac1e564602dc8a8 |
| ENCFF810LSF.bed.gz.dvc | 100.0 B | 5109611a82680d4bee60d339b2403369 |
| ENCFF810LSF.tabix.bed.gz | 519.77 KB | 98246862bd4c65cffd09b190c651e1f8 |
| ENCFF810LSF.tabix.bed.gz.dvc | 106.0 B | 5b6759769cc9b896c8a987b05a9dab5b |
| ENCFF810LSF.tabix.bed.gz.tbi | 153.2 KB | 83f28274c21d0317fd486459a0e4d6a7 |
| ENCFF810LSF.tabix.bed.gz.tbi.dvc | 110.0 B | 6ac26babaa20a4f78c00b622b07722e3 |
| genomic_resource.yaml | 5.24 KB | 74388904ce7f787288514258016ed07b |
| genomic_resource_original.yaml | 5.08 KB | a63d18adfa3a1301a2c8ff33e2a1e9b5 |
| statistics/ |