type: position_score
table:
  filename: ENCFF810LSF.tabix.bed.gz
  header_mode: none
  zero_based: true
  format: tabix
  chrom:
    column_index: 0
  pos_begin:
    column_index: 1
  pos_end:
    column_index: 2
scores:
- id: TF_ChIP-seq_ENCSR957FIZ
  column_index: 3
  type: float
  desc: 'TF_ChIP-seq ENCSR957FIZ [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens UBTF" and target="UBTF"]'
  histogram:
    type: number
    number_of_bins: 100
meta:
  summary: 'TF_ChIP-seq ENCSR957FIZ [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens UBTF" and target="UBTF"]'
  description: '**status**: released


    **biological\_replicates**: Rep 1, Rep 2


    **summary**: genetically modified (insertion) using CRISPR targeting H. sapiens
    UBTF


    **output\_type**: IDR thresholded peaks


    **audit\_internal\_action**: Released analysis {ENCAN917GNC|/analyses/ENCAN917GNC/}
    has replaced subobject file {1e678804-abbe-4d45-b357-29bd9185e034|/files/1e678804-abbe-4d45-b357-29bd9185e034/}


    **audit\_internal\_action**: Released analysis {ENCAN917GNC|/analyses/ENCAN917GNC/}
    has replaced subobject file {b2ffcea1-a749-48dc-87ec-c92365a5c4e3|/files/b2ffcea1-a749-48dc-87ec-c92365a5c4e3/}


    **audit\_internal\_action**: Released analysis {ENCAN917GNC|/analyses/ENCAN917GNC/}
    has replaced subobject file {25a2ab47-12e8-4c1e-87bd-30c226c71b1d|/files/25a2ab47-12e8-4c1e-87bd-30c226c71b1d/}


    **audit\_internal\_action**: Released analysis {ENCAN917GNC|/analyses/ENCAN917GNC/}
    has replaced subobject file {9dcaf771-b6fd-4b88-b94f-08cb8e256be1|/files/9dcaf771-b6fd-4b88-b94f-08cb8e256be1/}


    **audit\_internal\_action**: Released analysis {ENCAN917GNC|/analyses/ENCAN917GNC/}
    has in progress subobject document {b2cb380b-9a73-4850-9708-cba734307807|/documents/b2cb380b-9a73-4850-9708-cba734307807/}


    **audit\_internal\_action**: Released analysis {ENCAN917GNC|/analyses/ENCAN917GNC/}
    has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/}


    **audit\_warning**: PBC1 (PCR Bottlenecking Coefficient 1, M1/M\_distinct) is
    the ratio of the number of genomic locations where exactly one read maps uniquely
    (M1) to the number of genomic locations where some reads map (M\_distinct). A
    PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate
    bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking.
    PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments
    file {ENCFF119IDJ|/files/ENCFF119IDJ/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38
    pipeline was generated from a library with PBC1 value of 0.89.


    **audit\_warning**: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio
    of the number of genomic locations where exactly one read maps uniquely (M1) to
    the number of genomic locations where two reads map uniquely (M2). A PBC2 value
    in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3
    - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended,
    but > 3 is acceptable. ENCODE processed alignments file {ENCFF119IDJ|/files/ENCFF119IDJ/}
    processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library
    with PBC2 value of 8.82.


    **audit\_warning**: PBC1 (PCR Bottlenecking Coefficient 1, M1/M\_distinct) is
    the ratio of the number of genomic locations where exactly one read maps uniquely
    (M1) to the number of genomic locations where some reads map (M\_distinct). A
    PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate
    bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking.
    PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments
    file {ENCFF063UZG|/files/ENCFF063UZG/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38
    pipeline was generated from a library with PBC1 value of 0.87.


    **audit\_warning**: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio
    of the number of genomic locations where exactly one read maps uniquely (M1) to
    the number of genomic locations where two reads map uniquely (M2). A PBC2 value
    in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3
    - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended,
    but > 3 is acceptable. ENCODE processed alignments file {ENCFF063UZG|/files/ENCFF063UZG/}
    processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library
    with PBC2 value of 7.98.'
  labels:
    reference_genome: hg38/genomes/GRCh38-hg38
    accession: ENCSR957FIZ
    status: released
    assay_term_name: ChIP-seq
    simple_biosample_summary: genetically modified (insertion) using CRISPR targeting
      H. sapiens UBTF
    biosample_summary: Homo sapiens HepG2 genetically modified (insertion) using CRISPR
      targeting H. sapiens UBTF
    replication_type: isogenic
    biosample_ontology: /biosample-types/cell_line_EFO_0001187/
    perturbed: false
    doi: 10.17989/ENCSR957FIZ
    date_created: '2019-09-30T19:46:53.454306+00:00'
    date_released: '2020-08-17'
    submitter_comment: ''
    target: UBTF
