TF_ChIP-seq_ENCSR702GMW
TF_ChIP-seq ENCSR702GMW [biosample_summary="Homo sapiens PC-9" and target="EZH2phosphoT487"]
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| Id: | TF_ChIP-seq/ENCSR702GMW |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR702GMW [biosamplesummary="Homo sapiens PC-9" and target="EZH2phosphoT487"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN363AOB|/analyses/ENCAN363AOB/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: Processed alignments file {ENCFF592LTP|/files/ENCFF592LTP/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline has 19019278 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting EZH2phosphoT487-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF556RAE|/files/ENCFF556RAE/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline have a rescue ratio of 1.13 and a self consistency ratio of 2.14. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR702GMW | float |
TF_ChIP-seq_ENCSR702GMW |
TF_ChIP-seq ENCSR702GMW [biosample_summary="Homo sapiens PC-9" and target="EZH2phosphoT487"]
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[11.8, 1.24e+03] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF556RAE.bed.gz | 75.65 KB | 9942fcc200ad9a90d11226241ca97aa2 |
| ENCFF556RAE.bed.gz.dvc | 99.0 B | 39a0e750a1cf61d5d4d2ef725999099a |
| ENCFF556RAE.tabix.bed.gz | 51.67 KB | a9cd645cc51f73bcf04da1613f985ab5 |
| ENCFF556RAE.tabix.bed.gz.dvc | 105.0 B | 7df955a86e344cc017f8dbd1d0038d12 |
| ENCFF556RAE.tabix.bed.gz.tbi | 26.15 KB | e7373b73965ef0098a2a2aeabb43f776 |
| ENCFF556RAE.tabix.bed.gz.tbi.dvc | 109.0 B | ac859bbe726bf15be902d73073c5e88e |
| genomic_resource.yaml | 2.42 KB | 2d2517ac13ff7859aa8c95625bdbf010 |
| genomic_resource_original.yaml | 2.31 KB | 2c78f2bb07176799acdec9c5c6b7defe |
| statistics/ |