type: position_score
table:
  filename: ENCFF556RAE.tabix.bed.gz
  header_mode: none
  zero_based: true
  format: tabix
  chrom:
    column_index: 0
  pos_begin:
    column_index: 1
  pos_end:
    column_index: 2
scores:
- id: TF_ChIP-seq_ENCSR702GMW
  column_index: 3
  type: float
  desc: signal
  histogram:
    type: number
    number_of_bins: 100
meta:
  summary: 'ChIP-seq ENCSR702GMW [TISSUE: Homo sapiens PC-9, TARGET: EZH2phosphoT487]'
  description: "**status**: released\n\n**biological\\_replicates**: Rep 1, Rep 2\n\
    \n**summary**: \n\n**output\\_type**: IDR thresholded peaks\n\n**audit\\_internal\\\
    _action**: Released analysis {ENCAN363AOB|/analyses/ENCAN363AOB/} has in progress\
    \ subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/}\n\
    \n**audit\\_warning**: Processed alignments file {ENCFF592LTP|/files/ENCFF592LTP/}\
    \ processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline has 19019278 usable fragments.\
    \ The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting\
    \ EZH2phosphoT487-human and investigated as a transcription factor is 10 million\
    \ usable fragments. The recommended value is > 20 million, but > 10 million is\
    \ acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}\
    \ )\n\n**audit\\_warning**: Replicate concordance in ChIP-seq experiments is measured\
    \ by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed\
    \ IDR thresholded peaks files {ENCFF556RAE|/files/ENCFF556RAE/} processed by ChIP-seq\
    \ ENCODE4 v1.8.0 GRCh38 pipeline have a rescue ratio of 1.13 and a self consistency\
    \ ratio of 2.14. According to ENCODE standards, having both rescue ratio and self\
    \ consistency ratio values < 2 is recommended, but having only one of the ratio\
    \ values < 2 is acceptable."
  labels:
    reference_genome: hg38/genomes/GRCh38-hg38
    accession: ENCSR702GMW
    status: released
    assay_term_name: ChIP-seq
    simple_biosample_summary: ''
    biosample_summary: Homo sapiens PC-9
    replication_type: isogenic
    biosample_ontology: /biosample-types/cell_line_EFO_0002847/
    perturbed: false
    doi: 10.17989/ENCSR702GMW
    date_created: '2014-10-24T16:18:02.787611+00:00'
    date_released: '2018-02-06'
    submitter_comment: ''
    target: EZH2phosphoT487
