TF_ChIP-seq_ENCSR680OFU
TF_ChIP-seq ENCSR680OFU [biosample_summary="Homo sapiens HeLa-S3" and target="EP300"]
×
| Id: | TF_ChIP-seq/ENCSR680OFU |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR680OFU [biosamplesummary="Homo sapiens HeLa-S3" and target="EP300"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: optimal IDR thresholded peaks audit_internal_action: Archived analysis {ENCAN443OCA|/analyses/ENCAN443OCA/} has in progress subobject quality standard {encode3-tf-chip|/quality-standards/encode3-tf-chip/} audit_warning: Processed alignments file {ENCFF952XCP|/files/ENCFF952XCP/} processed by ChIP-seq ENCODE3 hg19 pipeline has 17891090 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting EP300-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF583XDA|/files/ENCFF583XDA/}, {ENCFF784YVX|/files/ENCFF784YVX/} processed by ChIP-seq ENCODE3 hg19 pipeline have a rescue ratio of 1.67 and a self consistency ratio of 2.72. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF240IVA|/files/ENCFF240IVA/}, {ENCFF803UTK|/files/ENCFF803UTK/} processed by ChIP-seq ENCODE3 hg19 pipeline have a rescue ratio of 1.67 and a self consistency ratio of 2.72. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR680OFU | float |
TF_ChIP-seq_ENCSR680OFU |
TF_ChIP-seq ENCSR680OFU [biosample_summary="Homo sapiens HeLa-S3" and target="EP300"]
|
|
[5.41, 461] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF784YVX.bed.gz | 381.7 KB | b98b1c410b37001d2fca2870513dfffb |
| ENCFF784YVX.bed.gz.dvc | 100.0 B | d1ab32e99b38b2fb9ced0b0a04b87481 |
| ENCFF784YVX.tabix.bed.gz | 289.0 KB | 20f6c6a91a4ed9234368d96e57fd8eb1 |
| ENCFF784YVX.tabix.bed.gz.dvc | 106.0 B | 5f9687596c338f67d0f92cca004a01d0 |
| ENCFF784YVX.tabix.bed.gz.tbi | 137.51 KB | d81d1646ab72a1790391760372a0f220 |
| ENCFF784YVX.tabix.bed.gz.tbi.dvc | 110.0 B | b9257e3b387d32cddef867fff46703de |
| genomic_resource.yaml | 3.09 KB | f3694f376f0568caaa24c583cf9cc5ba |
| genomic_resource_original.yaml | 2.99 KB | 8d1205c0d8d62f08542657dc3158fabb |
| statistics/ |