TF_ChIP-seq_ENCSR514EOE
TF_ChIP-seq ENCSR514EOE [biosample_summary="Homo sapiens HepG2" and target="BRD4"]
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| Id: | TF_ChIP-seq/ENCSR514EOE |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR514EOE [biosamplesummary="Homo sapiens HepG2" and target="BRD4"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN306LLL|/analyses/ENCAN306LLL/} has in progress subobject document {b41778dc-c8db-499c-8e9a-02d5f3fae558|/documents/b41778dc-c8db-499c-8e9a-02d5f3fae558/} audit_internal_action: Released analysis {ENCAN306LLL|/analyses/ENCAN306LLL/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: Processed alignments file {ENCFF764VIZ|/files/ENCFF764VIZ/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 19277319 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting BRD4-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF921PQB|/files/ENCFF921PQB/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline have a rescue ratio of 1.17 and a self consistency ratio of 2.09. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR514EOE | float |
TF_ChIP-seq_ENCSR514EOE |
TF_ChIP-seq ENCSR514EOE [biosample_summary="Homo sapiens HepG2" and target="BRD4"]
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[6.65, 177] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF921PQB.bed.gz | 90.53 KB | 2f98c7b4013374c99f621884d8b6c953 |
| ENCFF921PQB.bed.gz.dvc | 99.0 B | 564f9e519c1a9c095f50612d88049160 |
| ENCFF921PQB.tabix.bed.gz | 74.45 KB | 64861b6d9098e4ee87b65d5622ae449b |
| ENCFF921PQB.tabix.bed.gz.dvc | 105.0 B | 90bdc26f890691445ee512ebf16b5ad7 |
| ENCFF921PQB.tabix.bed.gz.tbi | 37.95 KB | c1dd509ae7f71c400d96ceef8020d27c |
| ENCFF921PQB.tabix.bed.gz.tbi.dvc | 109.0 B | cc1ff710a88bb17589ed861adbd5158a |
| genomic_resource.yaml | 2.6 KB | 9cfd027e4cad46a8c439cd153a25739e |
| genomic_resource_original.yaml | 2.5 KB | 6324ea3d50cd7c291c0f9527a34d4d24 |
| statistics/ |