type: position_score
table:
  filename: ENCFF921PQB.tabix.bed.gz
  header_mode: none
  zero_based: true
  format: tabix
  chrom:
    column_index: 0
  pos_begin:
    column_index: 1
  pos_end:
    column_index: 2
scores:
- id: TF_ChIP-seq_ENCSR514EOE
  column_index: 3
  type: float
  desc: 'TF_ChIP-seq ENCSR514EOE [biosample_summary="Homo sapiens HepG2" and target="BRD4"]'
  histogram:
    type: number
    number_of_bins: 100
meta:
  summary: 'TF_ChIP-seq ENCSR514EOE [biosample_summary="Homo sapiens HepG2" and target="BRD4"]'
  description: "**status**: released\n\n**biological\\_replicates**: Rep 1, Rep 2\n\
    \n**summary**: \n\n**output\\_type**: IDR thresholded peaks\n\n**audit\\_internal\\\
    _action**: Released analysis {ENCAN306LLL|/analyses/ENCAN306LLL/} has in progress\
    \ subobject document {b41778dc-c8db-499c-8e9a-02d5f3fae558|/documents/b41778dc-c8db-499c-8e9a-02d5f3fae558/}\n\
    \n**audit\\_internal\\_action**: Released analysis {ENCAN306LLL|/analyses/ENCAN306LLL/}\
    \ has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/}\n\
    \n**audit\\_warning**: Processed alignments file {ENCFF764VIZ|/files/ENCFF764VIZ/}\
    \ processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 19277319 usable fragments.\
    \ The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting\
    \ BRD4-human and investigated as a transcription factor is 10 million usable fragments.\
    \ The recommended value is > 20 million, but > 10 million is acceptable. (See\
    \ {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} )\n\n**audit\\_warning**:\
    \ Replicate concordance in ChIP-seq experiments is measured by calculating IDR\
    \ values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks\
    \ files {ENCFF921PQB|/files/ENCFF921PQB/} processed by ChIP-seq ENCODE4 v1.6.1\
    \ GRCh38 pipeline have a rescue ratio of 1.17 and a self consistency ratio of\
    \ 2.09. According to ENCODE standards, having both rescue ratio and self consistency\
    \ ratio values < 2 is recommended, but having only one of the ratio values < 2\
    \ is acceptable."
  labels:
    reference_genome: hg38/genomes/GRCh38-hg38
    accession: ENCSR514EOE
    status: released
    assay_term_name: ChIP-seq
    simple_biosample_summary: ''
    biosample_summary: Homo sapiens HepG2
    replication_type: isogenic
    biosample_ontology: /biosample-types/cell_line_EFO_0001187/
    perturbed: false
    doi: 10.17989/ENCSR514EOE
    date_created: '2016-02-26T02:49:07.692266+00:00'
    date_released: '2017-08-12'
    submitter_comment: ''
    target: BRD4
