TF_ChIP-seq_ENCSR513NBU
TF_ChIP-seq ENCSR513NBU [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF713" and target="ZNF713"]
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| Id: | TF_ChIP-seq/ENCSR513NBU |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR513NBU [biosamplesummary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF713" and target="ZNF713"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens ZNF713 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN874VCV|/analyses/ENCAN874VCV/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_internal_action: Released analysis {ENCAN874VCV|/analyses/ENCAN874VCV/} has in progress subobject document {005a05c4-8201-46a6-9337-7b7b0eb6737d|/documents/005a05c4-8201-46a6-9337-7b7b0eb6737d/} audit_internal_action: Released analysis {ENCAN874VCV|/analyses/ENCAN874VCV/} has replaced subobject file {5b9a7370-ad22-4389-8309-4e252542c914|/files/5b9a7370-ad22-4389-8309-4e252542c914/} audit_internal_action: Released analysis {ENCAN874VCV|/analyses/ENCAN874VCV/} has replaced subobject file {6f89fa6a-0a62-47a8-8d84-0f89549698db|/files/6f89fa6a-0a62-47a8-8d84-0f89549698db/} audit_internal_action: Released analysis {ENCAN874VCV|/analyses/ENCAN874VCV/} has replaced subobject file {ecf1d9d4-a3ad-48ed-a62b-e0ecea7d47dc|/files/ecf1d9d4-a3ad-48ed-a62b-e0ecea7d47dc/} audit_internal_action: Released analysis {ENCAN874VCV|/analyses/ENCAN874VCV/} has replaced subobject file {e47e5b9d-b841-4887-a1e5-c1270e69735b|/files/e47e5b9d-b841-4887-a1e5-c1270e69735b/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF395TNL|/files/ENCFF395TNL/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.89. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF395TNL|/files/ENCFF395TNL/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC2 value of 9.06. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF580FHR|/files/ENCFF580FHR/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.89. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF580FHR|/files/ENCFF580FHR/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library with PBC2 value of 9.23. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR513NBU | float |
TF_ChIP-seq_ENCSR513NBU |
TF_ChIP-seq ENCSR513NBU [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF713" and target="ZNF713"]
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[8.3, 187] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF262CSX.bed.gz | 111.48 KB | 671402217dbbd883051be7c93cc5ae37 |
| ENCFF262CSX.bed.gz.dvc | 100.0 B | 681195dda7a8f07b1ca7b53c0473c3e3 |
| ENCFF262CSX.tabix.bed.gz | 84.43 KB | ab751bde524eab3a3d7a61ff84dc7642 |
| ENCFF262CSX.tabix.bed.gz.dvc | 105.0 B | 86dd3dc6b20d76de07a9d5c504bf5df1 |
| ENCFF262CSX.tabix.bed.gz.tbi | 45.46 KB | 68f428811c63f6fc9db5243e7d12d895 |
| ENCFF262CSX.tabix.bed.gz.tbi.dvc | 109.0 B | d8c378bbc153442885b54346b324b40c |
| genomic_resource.yaml | 5.25 KB | a9034529a42617501101326105972397 |
| genomic_resource_original.yaml | 5.09 KB | 810751eed98fec1672eaf666d61c9656 |
| statistics/ |