type: position_score
table:
  filename: ENCFF262CSX.tabix.bed.gz
  header_mode: none
  zero_based: true
  format: tabix
  chrom:
    column_index: 0
  pos_begin:
    column_index: 1
  pos_end:
    column_index: 2
scores:
- id: TF_ChIP-seq_ENCSR513NBU
  column_index: 3
  type: float
  desc: 'TF_ChIP-seq ENCSR513NBU [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF713" and target="ZNF713"]'
  histogram:
    type: number
    number_of_bins: 100
meta:
  summary: 'TF_ChIP-seq ENCSR513NBU [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF713" and target="ZNF713"]'
  description: '**status**: released


    **biological\_replicates**: Rep 1, Rep 2


    **summary**: genetically modified (insertion) using CRISPR targeting H. sapiens
    ZNF713


    **output\_type**: IDR thresholded peaks


    **audit\_internal\_action**: Released analysis {ENCAN874VCV|/analyses/ENCAN874VCV/}
    has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/}


    **audit\_internal\_action**: Released analysis {ENCAN874VCV|/analyses/ENCAN874VCV/}
    has in progress subobject document {005a05c4-8201-46a6-9337-7b7b0eb6737d|/documents/005a05c4-8201-46a6-9337-7b7b0eb6737d/}


    **audit\_internal\_action**: Released analysis {ENCAN874VCV|/analyses/ENCAN874VCV/}
    has replaced subobject file {5b9a7370-ad22-4389-8309-4e252542c914|/files/5b9a7370-ad22-4389-8309-4e252542c914/}


    **audit\_internal\_action**: Released analysis {ENCAN874VCV|/analyses/ENCAN874VCV/}
    has replaced subobject file {6f89fa6a-0a62-47a8-8d84-0f89549698db|/files/6f89fa6a-0a62-47a8-8d84-0f89549698db/}


    **audit\_internal\_action**: Released analysis {ENCAN874VCV|/analyses/ENCAN874VCV/}
    has replaced subobject file {ecf1d9d4-a3ad-48ed-a62b-e0ecea7d47dc|/files/ecf1d9d4-a3ad-48ed-a62b-e0ecea7d47dc/}


    **audit\_internal\_action**: Released analysis {ENCAN874VCV|/analyses/ENCAN874VCV/}
    has replaced subobject file {e47e5b9d-b841-4887-a1e5-c1270e69735b|/files/e47e5b9d-b841-4887-a1e5-c1270e69735b/}


    **audit\_warning**: PBC1 (PCR Bottlenecking Coefficient 1, M1/M\_distinct) is
    the ratio of the number of genomic locations where exactly one read maps uniquely
    (M1) to the number of genomic locations where some reads map (M\_distinct). A
    PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate
    bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking.
    PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments
    file {ENCFF395TNL|/files/ENCFF395TNL/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38
    pipeline was generated from a library with PBC1 value of 0.89.


    **audit\_warning**: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio
    of the number of genomic locations where exactly one read maps uniquely (M1) to
    the number of genomic locations where two reads map uniquely (M2). A PBC2 value
    in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3
    - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended,
    but > 3 is acceptable. ENCODE processed alignments file {ENCFF395TNL|/files/ENCFF395TNL/}
    processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library
    with PBC2 value of 9.06.


    **audit\_warning**: PBC1 (PCR Bottlenecking Coefficient 1, M1/M\_distinct) is
    the ratio of the number of genomic locations where exactly one read maps uniquely
    (M1) to the number of genomic locations where some reads map (M\_distinct). A
    PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate
    bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking.
    PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments
    file {ENCFF580FHR|/files/ENCFF580FHR/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38
    pipeline was generated from a library with PBC1 value of 0.89.


    **audit\_warning**: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio
    of the number of genomic locations where exactly one read maps uniquely (M1) to
    the number of genomic locations where two reads map uniquely (M2). A PBC2 value
    in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3
    - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended,
    but > 3 is acceptable. ENCODE processed alignments file {ENCFF580FHR|/files/ENCFF580FHR/}
    processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline was generated from a library
    with PBC2 value of 9.23.'
  labels:
    reference_genome: hg38/genomes/GRCh38-hg38
    accession: ENCSR513NBU
    status: released
    assay_term_name: ChIP-seq
    simple_biosample_summary: genetically modified (insertion) using CRISPR targeting
      H. sapiens ZNF713
    biosample_summary: Homo sapiens HepG2 genetically modified (insertion) using CRISPR
      targeting H. sapiens ZNF713
    replication_type: isogenic
    biosample_ontology: /biosample-types/cell_line_EFO_0001187/
    perturbed: false
    doi: 10.17989/ENCSR513NBU
    date_created: '2019-09-30T19:49:24.119444+00:00'
    date_released: '2020-08-17'
    submitter_comment: ''
    target: ZNF713
