TF_ChIP-seq_ENCSR502GAX
TF_ChIP-seq ENCSR502GAX [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF652" and target="ZNF652"]
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| Id: | TF_ChIP-seq/ENCSR502GAX |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR502GAX [biosamplesummary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF652" and target="ZNF652"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens ZNF652 output_type: optimal IDR thresholded peaks audit_internal_action: Archived analysis {ENCAN178ETB|/analyses/ENCAN178ETB/} has in progress subobject quality standard {encode3-tf-chip|/quality-standards/encode3-tf-chip/} audit_warning: Processed alignments file {ENCFF054DOO|/files/ENCFF054DOO/} processed by ChIP-seq ENCODE3 hg19 pipeline has 19967055 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting ZNF652-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF004UHW|/files/ENCFF004UHW/}, {ENCFF115RUG|/files/ENCFF115RUG/} processed by ChIP-seq ENCODE3 hg19 pipeline have a rescue ratio of 1.42 and a self consistency ratio of 2.53. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF977AXL|/files/ENCFF977AXL/}, {ENCFF988KKJ|/files/ENCFF988KKJ/} processed by ChIP-seq ENCODE3 hg19 pipeline have a rescue ratio of 1.42 and a self consistency ratio of 2.53. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR502GAX | float |
TF_ChIP-seq_ENCSR502GAX |
TF_ChIP-seq ENCSR502GAX [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens ZNF652" and target="ZNF652"]
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[6.99, 627] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF115RUG.bed.gz | 276.98 KB | d71abae861554aaccf6aa1d80a2a6ec4 |
| ENCFF115RUG.bed.gz.dvc | 100.0 B | a3a846824c19c0a8686d4c1aee9d3757 |
| ENCFF115RUG.tabix.bed.gz | 205.93 KB | fc5f949952075e584c77f9deec04cf58 |
| ENCFF115RUG.tabix.bed.gz.dvc | 106.0 B | 9cbd81bb182b9b518c6ffd2484af5645 |
| ENCFF115RUG.tabix.bed.gz.tbi | 110.86 KB | c108e254aabfd5ab53d8f12d24452181 |
| ENCFF115RUG.tabix.bed.gz.tbi.dvc | 110.0 B | 6b51c96134c737322c5ea9ebfb209722 |
| genomic_resource.yaml | 3.28 KB | f270e63b477381a288e53c44dbb8f422 |
| genomic_resource_original.yaml | 3.12 KB | bbf0ef7cede46ca1af3d3165e00fe588 |
| statistics/ |