TF_ChIP-seq_ENCSR474YDA
TF_ChIP-seq ENCSR474YDA [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens YEATS4" and target="YEATS4"]
×
| Id: | TF_ChIP-seq/ENCSR474YDA |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR474YDA [biosamplesummary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens YEATS4" and target="YEATS4"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using CRISPR targeting H. sapiens YEATS4 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN332NDV|/analyses/ENCAN332NDV/} has in progress subobject document {95ebc75e-b4a8-4329-be59-2f8c2b6403b5|/documents/95ebc75e-b4a8-4329-be59-2f8c2b6403b5/} audit_internal_action: Released analysis {ENCAN332NDV|/analyses/ENCAN332NDV/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF931JDS|/files/ENCFF931JDS/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline have a rescue ratio of 1.14 and a self consistency ratio of 2.11. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF340OIC|/files/ENCFF340OIC/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline have a rescue ratio of 1.14 and a self consistency ratio of 2.11. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR474YDA | float |
TF_ChIP-seq_ENCSR474YDA |
TF_ChIP-seq ENCSR474YDA [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens YEATS4" and target="YEATS4"]
|
|
[10.2, 391] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF931JDS.bed.gz | 528.49 KB | 989e8f65ee3a875274d17a4537de144f |
| ENCFF931JDS.bed.gz.dvc | 100.0 B | 0a9f89d9dbc43c784fe5a68f6ad62a77 |
| ENCFF931JDS.tabix.bed.gz | 446.14 KB | b5e2070a894f3ba60bc7d4c0fe773d61 |
| ENCFF931JDS.tabix.bed.gz.dvc | 106.0 B | bf45b8a766199f1d6c0d1f7cdf4aab17 |
| ENCFF931JDS.tabix.bed.gz.tbi | 140.14 KB | 6c9c60fcbb4429f026faea7004da265a |
| ENCFF931JDS.tabix.bed.gz.tbi.dvc | 110.0 B | 618cf58bfff6372b174c398f088d9930 |
| genomic_resource.yaml | 2.96 KB | 303a4ea072d3e70136822562825628dc |
| genomic_resource_original.yaml | 2.79 KB | 1cbcee8ad8b87190c12a8856636b940d |
| statistics/ |