type: position_score
table:
  filename: ENCFF931JDS.tabix.bed.gz
  header_mode: none
  zero_based: true
  format: tabix
  chrom:
    column_index: 0
  pos_begin:
    column_index: 1
  pos_end:
    column_index: 2
scores:
- id: TF_ChIP-seq_ENCSR474YDA
  column_index: 3
  type: float
  desc: 'TF_ChIP-seq ENCSR474YDA [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens YEATS4" and target="YEATS4"]'
  histogram:
    type: number
    number_of_bins: 100
meta:
  summary: 'TF_ChIP-seq ENCSR474YDA [biosample_summary="Homo sapiens HepG2 genetically modified (insertion) using CRISPR targeting H. sapiens YEATS4" and target="YEATS4"]'
  description: '**status**: released


    **biological\_replicates**: Rep 1, Rep 2


    **summary**: genetically modified (insertion) using CRISPR targeting H. sapiens
    YEATS4


    **output\_type**: IDR thresholded peaks


    **audit\_internal\_action**: Released analysis {ENCAN332NDV|/analyses/ENCAN332NDV/}
    has in progress subobject document {95ebc75e-b4a8-4329-be59-2f8c2b6403b5|/documents/95ebc75e-b4a8-4329-be59-2f8c2b6403b5/}


    **audit\_internal\_action**: Released analysis {ENCAN332NDV|/analyses/ENCAN332NDV/}
    has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/}


    **audit\_warning**: Replicate concordance in ChIP-seq experiments is measured
    by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR
    thresholded peaks files {ENCFF931JDS|/files/ENCFF931JDS/} processed by ChIP-seq
    ENCODE4 v1.4.0 GRCh38 pipeline have a rescue ratio of 1.14 and a self consistency
    ratio of 2.11. According to ENCODE standards, having both rescue ratio and self
    consistency ratio values < 2 is recommended, but having only one of the ratio
    values < 2 is acceptable.


    **audit\_warning**: Replicate concordance in ChIP-seq experiments is measured
    by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR
    thresholded peaks files {ENCFF340OIC|/files/ENCFF340OIC/} processed by ChIP-seq
    ENCODE4 v1.4.0 GRCh38 pipeline have a rescue ratio of 1.14 and a self consistency
    ratio of 2.11. According to ENCODE standards, having both rescue ratio and self
    consistency ratio values < 2 is recommended, but having only one of the ratio
    values < 2 is acceptable.'
  labels:
    reference_genome: hg38/genomes/GRCh38-hg38
    accession: ENCSR474YDA
    status: released
    assay_term_name: ChIP-seq
    simple_biosample_summary: genetically modified (insertion) using CRISPR targeting
      H. sapiens YEATS4
    biosample_summary: Homo sapiens HepG2 genetically modified (insertion) using CRISPR
      targeting H. sapiens YEATS4
    replication_type: isogenic
    biosample_ontology: /biosample-types/cell_line_EFO_0001187/
    perturbed: false
    doi: 10.17989/ENCSR474YDA
    date_created: '2018-05-22T20:32:54.072107+00:00'
    date_released: '2020-07-08'
    submitter_comment: ''
    target: YEATS4
