| Id: | TF_ChIP-seq/ENCSR210MET |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR210MET [biosamplesummary="Homo sapiens HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF391" and target="ZNF391"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF391 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN480ANH|/analyses/ENCAN480ANH/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_internal_action: Released analysis {ENCAN480ANH|/analyses/ENCAN480ANH/} has in progress subobject document {595c5f42-d22f-4742-87bc-c70387d52d08|/documents/595c5f42-d22f-4742-87bc-c70387d52d08/} audit_warning: Processed alignments file {ENCFF326FHZ|/files/ENCFF326FHZ/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline has 13048494 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting ZNF391-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF233HUW|/files/ENCFF233HUW/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline have a rescue ratio of 1.63 and a self consistency ratio of 5.06. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF835SNY|/files/ENCFF835SNY/} processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline have a rescue ratio of 1.63 and a self consistency ratio of 5.06. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR210MET | float |
TF_ChIP-seq_ENCSR210MET |
TF_ChIP-seq ENCSR210MET [biosample_summary="Homo sapiens HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF391" and target="ZNF391"]
|
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[9.43, 302] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF233HUW.bed.gz | 195.75 KB | eb0395504f3ed9b174458e4283225dd7 |
| ENCFF233HUW.bed.gz.dvc | 100.0 B | 022483c2e86d858f4b08f364c440e04d |
| ENCFF233HUW.tabix.bed.gz | 141.63 KB | d3d9adc7a5cfb3e7b9c5175f7746d78f |
| ENCFF233HUW.tabix.bed.gz.dvc | 106.0 B | 1795b6a403df95621f250a254415ea81 |
| ENCFF233HUW.tabix.bed.gz.tbi | 77.05 KB | 975f37257f74c2e8ed0b18777ecb15cf |
| ENCFF233HUW.tabix.bed.gz.tbi.dvc | 109.0 B | 01cbc4a24dffb2fa5a6f87005ab30203 |
| genomic_resource.yaml | 3.55 KB | eef3d69b98fa88c8718b9f737b386dfc |
| genomic_resource_original.yaml | 3.37 KB | 793dd42c529c85332835335707bed677 |
| statistics/ |