type: position_score
table:
  filename: ENCFF233HUW.tabix.bed.gz
  header_mode: none
  zero_based: true
  format: tabix
  chrom:
    column_index: 0
  pos_begin:
    column_index: 1
  pos_end:
    column_index: 2
scores:
- id: TF_ChIP-seq_ENCSR210MET
  column_index: 3
  type: float
  desc: 'TF_ChIP-seq ENCSR210MET [biosample_summary="Homo sapiens HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF391" and target="ZNF391"]'
  histogram:
    type: number
    number_of_bins: 100
meta:
  summary: 'TF_ChIP-seq ENCSR210MET [biosample_summary="Homo sapiens HEK293 genetically modified (insertion) using site-specific recombination targeting H. sapiens ZNF391" and target="ZNF391"]'
  description: '**status**: released


    **biological\_replicates**: Rep 1, Rep 2


    **summary**: genetically modified (insertion) using site-specific recombination
    targeting H. sapiens ZNF391


    **output\_type**: IDR thresholded peaks


    **audit\_internal\_action**: Released analysis {ENCAN480ANH|/analyses/ENCAN480ANH/}
    has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/}


    **audit\_internal\_action**: Released analysis {ENCAN480ANH|/analyses/ENCAN480ANH/}
    has in progress subobject document {595c5f42-d22f-4742-87bc-c70387d52d08|/documents/595c5f42-d22f-4742-87bc-c70387d52d08/}


    **audit\_warning**: Processed alignments file {ENCFF326FHZ|/files/ENCFF326FHZ/}
    processed by ChIP-seq ENCODE4 v1.5.1 GRCh38 pipeline has 13048494 usable fragments.
    The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting
    ZNF391-human and investigated as a transcription factor is 10 million usable fragments.
    The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE
    ChIP-seq data standards|/data-standards/chip-seq/} )


    **audit\_warning**: Replicate concordance in ChIP-seq experiments is measured
    by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR
    thresholded peaks files {ENCFF233HUW|/files/ENCFF233HUW/} processed by ChIP-seq
    ENCODE4 v1.5.1 GRCh38 pipeline have a rescue ratio of 1.63 and a self consistency
    ratio of 5.06. According to ENCODE standards, having both rescue ratio and self
    consistency ratio values < 2 is recommended, but having only one of the ratio
    values < 2 is acceptable.


    **audit\_warning**: Replicate concordance in ChIP-seq experiments is measured
    by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR
    thresholded peaks files {ENCFF835SNY|/files/ENCFF835SNY/} processed by ChIP-seq
    ENCODE4 v1.5.1 GRCh38 pipeline have a rescue ratio of 1.63 and a self consistency
    ratio of 5.06. According to ENCODE standards, having both rescue ratio and self
    consistency ratio values < 2 is recommended, but having only one of the ratio
    values < 2 is acceptable.'
  labels:
    reference_genome: hg38/genomes/GRCh38-hg38
    accession: ENCSR210MET
    status: released
    assay_term_name: ChIP-seq
    simple_biosample_summary: genetically modified (insertion) using site-specific
      recombination targeting H. sapiens ZNF391
    biosample_summary: Homo sapiens HEK293 genetically modified (insertion) using
      site-specific recombination targeting H. sapiens ZNF391
    replication_type: isogenic
    biosample_ontology: /biosample-types/cell_line_EFO_0001182/
    perturbed: false
    doi: 10.17989/ENCSR210MET
    date_created: '2016-03-29T17:49:51.006126+00:00'
    date_released: '2016-10-07'
    submitter_comment: ''
    target: ZNF391
