| Id: | TF_ChIP-seq/ENCSR105HEC |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR105HEC [biosamplesummary="Homo sapiens activated B cell male adult\ \ (22 years) treated with 0.5 \u03BCM CpG ODN for 24 hours" and target="CTCF"] |
| Description: |
status: released biological_replicates: Rep 1 summary: male adult (22 years) treated with 0.5 μM CpG ODN for 24 hours output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN232GMV|/analyses/ENCAN232GMV/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF957VEO|/files/ENCFF957VEO/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC1 value of 0.88. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF957VEO|/files/ENCFF957VEO/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library with PBC2 value of 8.63. |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR105HEC | float |
TF_ChIP-seq_ENCSR105HEC |
TF_ChIP-seq ENCSR105HEC [biosample_summary="Homo sapiens activated B cell male adult\ \ (22 years) treated with 0.5 \u03BCM CpG ODN for 24 hours" and target="CTCF"]
|
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[9.46, 100] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF787SIQ.bed.gz | 190.09 KB | 9a2d1ee90c934041c582f20d9d2d6ff3 |
| ENCFF787SIQ.bed.gz.dvc | 100.0 B | 4881619846e8e49622ba67c1d5353e27 |
| ENCFF787SIQ.tabix.bed.gz | 144.61 KB | af001dfa3ce979e1bcd8778a7ee38439 |
| ENCFF787SIQ.tabix.bed.gz.dvc | 106.0 B | 950bc0de7a366e7db0ced2570397ba52 |
| ENCFF787SIQ.tabix.bed.gz.tbi | 80.78 KB | 90eb37a82d976d16f0f379db3f73ad32 |
| ENCFF787SIQ.tabix.bed.gz.tbi.dvc | 109.0 B | 956478b85c3ad0c369c4b3ab66218b92 |
| genomic_resource.yaml | 3.05 KB | 336410d47172f14ba91e6f6bd1b0aff5 |
| genomic_resource_original.yaml | 2.88 KB | a8735fafe72d9c22aaa8e66ef2294545 |
| statistics/ |