type: position_score
table:
  filename: ENCFF787SIQ.tabix.bed.gz
  header_mode: none
  zero_based: true
  format: tabix
  chrom:
    column_index: 0
  pos_begin:
    column_index: 1
  pos_end:
    column_index: 2
scores:
- id: TF_ChIP-seq_ENCSR105HEC
  column_index: 3
  type: float
  desc: signal
  histogram:
    type: number
    number_of_bins: 100
meta:
  summary: "ChIP-seq ENCSR105HEC [TISSUE: Homo sapiens activated B cell male adult\
    \ (22 years) treated with 0.5 \u03BCM CpG ODN for 24 hours, TARGET: CTCF]"
  description: "**status**: released\n\n**biological\\_replicates**: Rep 1\n\n**summary**:\
    \ male adult (22 years) treated with 0.5 \u03BCM CpG ODN for 24 hours\n\n**output\\\
    _type**: IDR thresholded peaks\n\n**audit\\_internal\\_action**: Released analysis\
    \ {ENCAN232GMV|/analyses/ENCAN232GMV/} has in progress subobject quality standard\
    \ {encode4-tf-chip|/quality-standards/encode4-tf-chip/}\n\n**audit\\_warning**:\
    \ PBC1 (PCR Bottlenecking Coefficient 1, M1/M\\_distinct) is the ratio of the\
    \ number of genomic locations where exactly one read maps uniquely (M1) to the\
    \ number of genomic locations where some reads map (M\\_distinct). A PBC1 value\
    \ in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking,\
    \ 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value >\
    \ 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file\
    \ {ENCFF957VEO|/files/ENCFF957VEO/} processed by ChIP-seq ENCODE4 v1.8.0 GRCh38\
    \ pipeline was generated from a library with PBC1 value of 0.88.\n\n**audit\\\
    _warning**: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the\
    \ number of genomic locations where exactly one read maps uniquely (M1) to the\
    \ number of genomic locations where two reads map uniquely (M2). A PBC2 value\
    \ in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking,\
    \ 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended,\
    \ but > 3 is acceptable. ENCODE processed alignments file {ENCFF957VEO|/files/ENCFF957VEO/}\
    \ processed by ChIP-seq ENCODE4 v1.8.0 GRCh38 pipeline was generated from a library\
    \ with PBC2 value of 8.63."
  labels:
    reference_genome: hg38/genomes/GRCh38-hg38
    accession: ENCSR105HEC
    status: released
    assay_term_name: ChIP-seq
    simple_biosample_summary: "male adult (22 years) treated with 0.5 \u03BCM CpG\
      \ ODN for 24 hours"
    biosample_summary: "Homo sapiens activated B cell male adult (22 years) treated\
      \ with 0.5 \u03BCM CpG ODN for 24 hours"
    replication_type: unreplicated
    biosample_ontology: /biosample-types/primary_cell_NTR_0000506/
    perturbed: false
    doi: 10.17989/ENCSR105HEC
    date_created: '2022-05-11T01:54:34.676304+00:00'
    date_released: '2022-06-09'
    submitter_comment: ''
    target: CTCF
