TF_ChIP-seq_ENCSR000EYV
TF_ChIP-seq ENCSR000EYV [biosample_summary="Homo sapiens GM12878" and target="JUND"]
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| Id: | TF_ChIP-seq/ENCSR000EYV |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR000EYV [biosamplesummary="Homo sapiens GM12878" and target="JUND"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: IDR thresholded peaks audit_error: Processed alignments file {ENCFF509ZNE|/files/ENCFF509ZNE/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 2812208 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting JUND-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_error: Processed alignments file {ENCFF848JON|/files/ENCFF848JON/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 3521454 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting JUND-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_internal_action: Released analysis {ENCAN738DKL|/analyses/ENCAN738DKL/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_internal_action: Released analysis {ENCAN738DKL|/analyses/ENCAN738DKL/} has in progress subobject document {55c4d733-419a-4534-ad56-d7cd1017bd8e|/documents/55c4d733-419a-4534-ad56-d7cd1017bd8e/} audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF023QWA|/files/ENCFF023QWA/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline have a rescue ratio of 1.06 and a self consistency ratio of 4.26. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR000EYV | float |
TF_ChIP-seq_ENCSR000EYV |
TF_ChIP-seq ENCSR000EYV [biosample_summary="Homo sapiens GM12878" and target="JUND"]
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[2.18, 125] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF023QWA.bed.gz | 35.64 KB | 77bb2a85b2c6b43b71ae5676742b3ea5 |
| ENCFF023QWA.bed.gz.dvc | 99.0 B | d10674d634f89e9426a0084f736c6270 |
| ENCFF023QWA.tabix.bed.gz | 25.43 KB | 07ad8c36a24dff709823819f1ec27991 |
| ENCFF023QWA.tabix.bed.gz.dvc | 105.0 B | 22f60a941418f7fd74deb2e3e65cdc07 |
| ENCFF023QWA.tabix.bed.gz.tbi | 25.31 KB | 023847d5295655129fa5c2056d07aa03 |
| ENCFF023QWA.tabix.bed.gz.tbi.dvc | 109.0 B | 31523c6ca9c7b73b3011f58f06bb32d1 |
| genomic_resource.yaml | 3.1 KB | 8fce9be3e1966b9b18bc5f931ca3c929 |
| genomic_resource_original.yaml | 3.01 KB | 195e738be1f4332a6d25089d5f20d6e5 |
| statistics/ |