type: position_score
table:
  filename: ENCFF023QWA.tabix.bed.gz
  header_mode: none
  zero_based: true
  format: tabix
  chrom:
    column_index: 0
  pos_begin:
    column_index: 1
  pos_end:
    column_index: 2
scores:
- id: TF_ChIP-seq_ENCSR000EYV
  column_index: 3
  type: float
  desc: 'TF_ChIP-seq ENCSR000EYV [biosample_summary="Homo sapiens GM12878" and target="JUND"]'
  histogram:
    type: number
    number_of_bins: 100
meta:
  summary: 'TF_ChIP-seq ENCSR000EYV [biosample_summary="Homo sapiens GM12878" and target="JUND"]'
  description: "**status**: released\n\n**biological\\_replicates**: Rep 1, Rep 2\n\
    \n**summary**: \n\n**output\\_type**: IDR thresholded peaks\n\n**audit\\_error**:\
    \ Processed alignments file {ENCFF509ZNE|/files/ENCFF509ZNE/} processed by ChIP-seq\
    \ ENCODE4 v1.6.1 GRCh38 pipeline has 2812208 usable fragments. The minimum ENCODE\
    \ standard for each replicate in a ChIP-seq experiment targeting JUND-human and\
    \ investigated as a transcription factor is 10 million usable fragments. The recommended\
    \ value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq\
    \ data standards|/data-standards/chip-seq/} )\n\n**audit\\_error**: Processed\
    \ alignments file {ENCFF848JON|/files/ENCFF848JON/} processed by ChIP-seq ENCODE4\
    \ v1.6.1 GRCh38 pipeline has 3521454 usable fragments. The minimum ENCODE standard\
    \ for each replicate in a ChIP-seq experiment targeting JUND-human and investigated\
    \ as a transcription factor is 10 million usable fragments. The recommended value\
    \ is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data\
    \ standards|/data-standards/chip-seq/} )\n\n**audit\\_internal\\_action**: Released\
    \ analysis {ENCAN738DKL|/analyses/ENCAN738DKL/} has in progress subobject quality\
    \ standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/}\n\n**audit\\\
    _internal\\_action**: Released analysis {ENCAN738DKL|/analyses/ENCAN738DKL/} has\
    \ in progress subobject document {55c4d733-419a-4534-ad56-d7cd1017bd8e|/documents/55c4d733-419a-4534-ad56-d7cd1017bd8e/}\n\
    \n**audit\\_warning**: Replicate concordance in ChIP-seq experiments is measured\
    \ by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed\
    \ IDR thresholded peaks files {ENCFF023QWA|/files/ENCFF023QWA/} processed by ChIP-seq\
    \ ENCODE4 v1.6.1 GRCh38 pipeline have a rescue ratio of 1.06 and a self consistency\
    \ ratio of 4.26. According to ENCODE standards, having both rescue ratio and self\
    \ consistency ratio values < 2 is recommended, but having only one of the ratio\
    \ values < 2 is acceptable."
  labels:
    reference_genome: hg38/genomes/GRCh38-hg38
    accession: ENCSR000EYV
    status: released
    assay_term_name: ChIP-seq
    simple_biosample_summary: ''
    biosample_summary: Homo sapiens GM12878
    replication_type: isogenic
    biosample_ontology: /biosample-types/cell_line_EFO_0002784/
    perturbed: false
    doi: 10.17989/ENCSR000EYV
    date_created: '2013-09-13T16:54:01.774292-08:00'
    date_released: '2011-10-29'
    submitter_comment: ''
    target: JUND
