TF_ChIP-seq_ENCSR000EWF
TF_ChIP-seq ENCSR000EWF [biosample_summary="Homo sapiens K562" and target="YY1"]
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| Id: | TF_ChIP-seq/ENCSR000EWF |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR000EWF [biosamplesummary="Homo sapiens K562" and target="YY1"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN039IAI|/analyses/ENCAN039IAI/} has in progress subobject document {15cf2356-bfe9-44b1-8392-8eabb0de607d|/documents/15cf2356-bfe9-44b1-8392-8eabb0de607d/} audit_internal_action: Released analysis {ENCAN039IAI|/analyses/ENCAN039IAI/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_not_compliant: Processed alignments file {ENCFF893LSE|/files/ENCFF893LSE/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 6378339 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting YY1-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_not_compliant: Processed alignments file {ENCFF355RIV|/files/ENCFF355RIV/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 6607684 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting YY1-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF589PZO|/files/ENCFF589PZO/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline have a rescue ratio of 1.26 and a self consistency ratio of 2.19. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR000EWF | float |
TF_ChIP-seq_ENCSR000EWF |
TF_ChIP-seq ENCSR000EWF [biosample_summary="Homo sapiens K562" and target="YY1"]
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[2.71, 480] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF589PZO.bed.gz | 93.72 KB | d7a1643993569af41ae068296b83ae60 |
| ENCFF589PZO.bed.gz.dvc | 99.0 B | 2a27e2ee1b6da648bb96f37849b157fc |
| ENCFF589PZO.tabix.bed.gz | 65.72 KB | f84884ee8e048ba09c1c7c5a3f953128 |
| ENCFF589PZO.tabix.bed.gz.dvc | 105.0 B | edfe9ee304a41d9ccb393fb4de086101 |
| ENCFF589PZO.tabix.bed.gz.tbi | 49.25 KB | 91f715e998e475019eaade4ebf2adb3c |
| ENCFF589PZO.tabix.bed.gz.tbi.dvc | 109.0 B | 9403edeb61a55e604e9ffa4305d27baf |
| genomic_resource.yaml | 3.11 KB | b23d5e943542e2f1a81103be1a03b4ff |
| genomic_resource_original.yaml | 3.01 KB | cecb5359daed1434f178d9eb487c2a2e |
| statistics/ |