type: position_score
table:
  filename: ENCFF589PZO.tabix.bed.gz
  header_mode: none
  zero_based: true
  format: tabix
  chrom:
    column_index: 0
  pos_begin:
    column_index: 1
  pos_end:
    column_index: 2
scores:
- id: TF_ChIP-seq_ENCSR000EWF
  column_index: 3
  type: float
  desc: signal
  histogram:
    type: number
    number_of_bins: 100
meta:
  summary: 'ChIP-seq ENCSR000EWF [TISSUE: Homo sapiens K562, TARGET: YY1]'
  description: "**status**: released\n\n**biological\\_replicates**: Rep 1, Rep 2\n\
    \n**summary**: \n\n**output\\_type**: IDR thresholded peaks\n\n**audit\\_internal\\\
    _action**: Released analysis {ENCAN039IAI|/analyses/ENCAN039IAI/} has in progress\
    \ subobject document {15cf2356-bfe9-44b1-8392-8eabb0de607d|/documents/15cf2356-bfe9-44b1-8392-8eabb0de607d/}\n\
    \n**audit\\_internal\\_action**: Released analysis {ENCAN039IAI|/analyses/ENCAN039IAI/}\
    \ has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/}\n\
    \n**audit\\_not\\_compliant**: Processed alignments file {ENCFF893LSE|/files/ENCFF893LSE/}\
    \ processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 6378339 usable fragments.\
    \ The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting\
    \ YY1-human and investigated as a transcription factor is 10 million usable fragments.\
    \ The recommended value is > 20 million, but > 10 million is acceptable. (See\
    \ {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} )\n\n**audit\\_not\\\
    _compliant**: Processed alignments file {ENCFF355RIV|/files/ENCFF355RIV/} processed\
    \ by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 6607684 usable fragments. The\
    \ minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting\
    \ YY1-human and investigated as a transcription factor is 10 million usable fragments.\
    \ The recommended value is > 20 million, but > 10 million is acceptable. (See\
    \ {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} )\n\n**audit\\_warning**:\
    \ Replicate concordance in ChIP-seq experiments is measured by calculating IDR\
    \ values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks\
    \ files {ENCFF589PZO|/files/ENCFF589PZO/} processed by ChIP-seq ENCODE4 v1.6.1\
    \ GRCh38 pipeline have a rescue ratio of 1.26 and a self consistency ratio of\
    \ 2.19. According to ENCODE standards, having both rescue ratio and self consistency\
    \ ratio values < 2 is recommended, but having only one of the ratio values < 2\
    \ is acceptable."
  labels:
    reference_genome: hg38/genomes/GRCh38-hg38
    accession: ENCSR000EWF
    status: released
    assay_term_name: ChIP-seq
    simple_biosample_summary: ''
    biosample_summary: Homo sapiens K562
    replication_type: isogenic
    biosample_ontology: /biosample-types/cell_line_EFO_0002067/
    perturbed: false
    doi: 10.17989/ENCSR000EWF
    date_created: '2014-02-12T23:01:33.250220+00:00'
    date_released: '2011-10-29'
    submitter_comment: ''
    target: YY1
