TF_ChIP-seq_ENCSR000EHQ
TF_ChIP-seq ENCSR000EHQ [biosample_summary="Homo sapiens K562" and target="POLR3G"]
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| Id: | TF_ChIP-seq/ENCSR000EHQ |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR000EHQ [biosamplesummary="Homo sapiens K562" and target="POLR3G"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: IDR thresholded peaks audit_error: Processed alignments file {ENCFF618ILX|/files/ENCFF618ILX/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 1845331 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting POLR3G-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_error: Processed alignments file {ENCFF877UOX|/files/ENCFF877UOX/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 1713187 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting POLR3G-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_internal_action: Released analysis {ENCAN178BAK|/analyses/ENCAN178BAK/} has in progress subobject document {6325c79f-74c9-4624-a2c3-5b2ead1902f2|/documents/6325c79f-74c9-4624-a2c3-5b2ead1902f2/} audit_internal_action: Released analysis {ENCAN178BAK|/analyses/ENCAN178BAK/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_not_compliant: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF307GHJ|/files/ENCFF307GHJ/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline have a rescue ratio of 2.97 and a self consistency ratio of 15.33. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR000EHQ | float |
TF_ChIP-seq_ENCSR000EHQ |
TF_ChIP-seq ENCSR000EHQ [biosample_summary="Homo sapiens K562" and target="POLR3G"]
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[2.1, 47.6] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF307GHJ.bed.gz | 4.34 KB | 4197dc2aeceb62219c7d3baa9dea6531 |
| ENCFF307GHJ.bed.gz.dvc | 98.0 B | b900120e75e6639c0b4b7d8941efb155 |
| ENCFF307GHJ.tabix.bed.gz | 3.16 KB | 7e4262525d3047f5a981aef7e1047002 |
| ENCFF307GHJ.tabix.bed.gz.dvc | 104.0 B | b9fddfce453bb95594c254f0519395dc |
| ENCFF307GHJ.tabix.bed.gz.tbi | 5.36 KB | 51b70caa58711064478ec7822fd69bf2 |
| ENCFF307GHJ.tabix.bed.gz.tbi.dvc | 108.0 B | 1f08431bd3922de5790ff5ef6fd6f918 |
| genomic_resource.yaml | 3.11 KB | 3a9170f664a3aa5c08b3ac625ba0bf76 |
| genomic_resource_original.yaml | 3.02 KB | 95b88783aacc28e5971ae25cbee5deb1 |
| statistics/ |