type: position_score
table:
  filename: ENCFF307GHJ.tabix.bed.gz
  header_mode: none
  zero_based: true
  format: tabix
  chrom:
    column_index: 0
  pos_begin:
    column_index: 1
  pos_end:
    column_index: 2
scores:
- id: TF_ChIP-seq_ENCSR000EHQ
  column_index: 3
  type: float
  desc: 'TF_ChIP-seq ENCSR000EHQ [biosample_summary="Homo sapiens K562" and target="POLR3G"]'
  histogram:
    type: number
    number_of_bins: 100
meta:
  summary: 'TF_ChIP-seq ENCSR000EHQ [biosample_summary="Homo sapiens K562" and target="POLR3G"]'
  description: "**status**: released\n\n**biological\\_replicates**: Rep 1, Rep 2\n\
    \n**summary**: \n\n**output\\_type**: IDR thresholded peaks\n\n**audit\\_error**:\
    \ Processed alignments file {ENCFF618ILX|/files/ENCFF618ILX/} processed by ChIP-seq\
    \ ENCODE4 v1.6.1 GRCh38 pipeline has 1845331 usable fragments. The minimum ENCODE\
    \ standard for each replicate in a ChIP-seq experiment targeting POLR3G-human\
    \ and investigated as a transcription factor is 10 million usable fragments. The\
    \ recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE\
    \ ChIP-seq data standards|/data-standards/chip-seq/} )\n\n**audit\\_error**: Processed\
    \ alignments file {ENCFF877UOX|/files/ENCFF877UOX/} processed by ChIP-seq ENCODE4\
    \ v1.6.1 GRCh38 pipeline has 1713187 usable fragments. The minimum ENCODE standard\
    \ for each replicate in a ChIP-seq experiment targeting POLR3G-human and investigated\
    \ as a transcription factor is 10 million usable fragments. The recommended value\
    \ is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data\
    \ standards|/data-standards/chip-seq/} )\n\n**audit\\_internal\\_action**: Released\
    \ analysis {ENCAN178BAK|/analyses/ENCAN178BAK/} has in progress subobject document\
    \ {6325c79f-74c9-4624-a2c3-5b2ead1902f2|/documents/6325c79f-74c9-4624-a2c3-5b2ead1902f2/}\n\
    \n**audit\\_internal\\_action**: Released analysis {ENCAN178BAK|/analyses/ENCAN178BAK/}\
    \ has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/}\n\
    \n**audit\\_not\\_compliant**: Replicate concordance in ChIP-seq experiments is\
    \ measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed\
    \ IDR thresholded peaks files {ENCFF307GHJ|/files/ENCFF307GHJ/} processed by ChIP-seq\
    \ ENCODE4 v1.6.1 GRCh38 pipeline have a rescue ratio of 2.97 and a self consistency\
    \ ratio of 15.33. According to ENCODE standards, having both rescue ratio and\
    \ self consistency ratio values < 2 is recommended, but having only one of the\
    \ ratio values < 2 is acceptable."
  labels:
    reference_genome: hg38/genomes/GRCh38-hg38
    accession: ENCSR000EHQ
    status: released
    assay_term_name: ChIP-seq
    simple_biosample_summary: ''
    biosample_summary: Homo sapiens K562
    replication_type: isogenic
    biosample_ontology: /biosample-types/cell_line_EFO_0002067/
    perturbed: false
    doi: 10.17989/ENCSR000EHQ
    date_created: '2014-02-12T23:18:43.766556+00:00'
    date_released: '2011-10-29'
    submitter_comment: ''
    target: POLR3G
