TF_ChIP-seq_ENCSR000EHF
TF_ChIP-seq ENCSR000EHF [biosample_summary="Homo sapiens K562" and target="POLR2AphosphoS2"]
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| Id: | TF_ChIP-seq/ENCSR000EHF |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR000EHF [biosamplesummary="Homo sapiens K562" and target="POLR2AphosphoS2"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: IDR thresholded peaks audit_error: Processed alignments file {ENCFF733DZV|/files/ENCFF733DZV/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 4898284 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting POLR2AphosphoS2-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_internal_action: Released analysis {ENCAN307CMP|/analyses/ENCAN307CMP/} has in progress subobject document {c8364348-37c8-4f82-9ec3-6f68a1d94276|/documents/c8364348-37c8-4f82-9ec3-6f68a1d94276/} audit_internal_action: Released analysis {ENCAN307CMP|/analyses/ENCAN307CMP/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_not_compliant: Processed alignments file {ENCFF083UKK|/files/ENCFF083UKK/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 6304888 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting POLR2AphosphoS2-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF950YZE|/files/ENCFF950YZE/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline have a rescue ratio of 1.37 and a self consistency ratio of 2.22. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR000EHF | float |
TF_ChIP-seq_ENCSR000EHF |
TF_ChIP-seq ENCSR000EHF [biosample_summary="Homo sapiens K562" and target="POLR2AphosphoS2"]
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[2.69, 131] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF950YZE.bed.gz | 70.51 KB | d7c4c640b4d7061d75cd988c1cab8d68 |
| ENCFF950YZE.bed.gz.dvc | 99.0 B | 3fbc8f9790d393edd9ec2039bd16f617 |
| ENCFF950YZE.tabix.bed.gz | 55.94 KB | 32825a6e2d7131f9896d0ad04a8f132b |
| ENCFF950YZE.tabix.bed.gz.dvc | 105.0 B | 22cf4635a434a91c6c36860f1e62df9e |
| ENCFF950YZE.tabix.bed.gz.tbi | 22.8 KB | 281b9d157396b044c9305279ecce69c6 |
| ENCFF950YZE.tabix.bed.gz.tbi.dvc | 109.0 B | bf788547fb458011e48b20661db8a2e6 |
| genomic_resource.yaml | 3.16 KB | 221ea402ead4b283b2bc8e2371f1aff7 |
| genomic_resource_original.yaml | 3.05 KB | a2beb970cfb7afed05baa0a4cec7c5d0 |
| statistics/ |