TF_ChIP-seq_ENCSR000EAU
TF_ChIP-seq ENCSR000EAU [biosample_summary="Homo sapiens GM18505" and target="POLR2A"]
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| Id: | TF_ChIP-seq/ENCSR000EAU |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR000EAU [biosamplesummary="Homo sapiens GM18505" and target="POLR2A"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2, Rep 3, Rep 4 summary: output_type: IDR thresholded peaks audit_error: Processed alignments file {ENCFF512QDV|/files/ENCFF512QDV/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 4053593 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting POLR2A-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_error: Processed alignments file {ENCFF984MAL|/files/ENCFF984MAL/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 4584669 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting POLR2A-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_internal_action: Released analysis {ENCAN069SIA|/analyses/ENCAN069SIA/} has in progress subobject document {8f25e1ff-1fcc-4f6e-bde1-c4673abbba81|/documents/8f25e1ff-1fcc-4f6e-bde1-c4673abbba81/} audit_internal_action: Released analysis {ENCAN069SIA|/analyses/ENCAN069SIA/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_not_compliant: Processed alignments file {ENCFF765ZHF|/files/ENCFF765ZHF/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 6593003 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting POLR2A-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_not_compliant: Processed alignments file {ENCFF270BRF|/files/ENCFF270BRF/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 8984101 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting POLR2A-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF292PBX|/files/ENCFF292PBX/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline have a rescue ratio of 1.40 and a self consistency ratio of 2.39. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR000EAU | float |
TF_ChIP-seq_ENCSR000EAU |
TF_ChIP-seq ENCSR000EAU [biosample_summary="Homo sapiens GM18505" and target="POLR2A"]
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[5.28, 970] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF292PBX.bed.gz | 519.91 KB | d3b56dda80cfb0b891485c40b0e0da5f |
| ENCFF292PBX.bed.gz.dvc | 100.0 B | 7bd60096a346a7f5c58d9c1fc2ecf030 |
| ENCFF292PBX.tabix.bed.gz | 417.92 KB | 95e2680096655034d79ae7b11e4e40ce |
| ENCFF292PBX.tabix.bed.gz.dvc | 106.0 B | 919dbeb598eeea0eaf5b9fd0494cf38f |
| ENCFF292PBX.tabix.bed.gz.tbi | 127.82 KB | 2cc9762c2f65436ea06504062f4b310c |
| ENCFF292PBX.tabix.bed.gz.tbi.dvc | 110.0 B | db83c33937a03da8ae6270ad825d9fd4 |
| genomic_resource.yaml | 4.15 KB | c2b9551918f73da15eaa0011dacea6f7 |
| genomic_resource_original.yaml | 4.05 KB | 99272739e78c0a3673a1ebcb65705147 |
| statistics/ |