type: position_score
table:
  filename: ENCFF292PBX.tabix.bed.gz
  header_mode: none
  zero_based: true
  format: tabix
  chrom:
    column_index: 0
  pos_begin:
    column_index: 1
  pos_end:
    column_index: 2
scores:
- id: TF_ChIP-seq_ENCSR000EAU
  column_index: 3
  type: float
  desc: signal
  histogram:
    type: number
    number_of_bins: 100
meta:
  summary: 'ChIP-seq ENCSR000EAU [TISSUE: Homo sapiens GM18505, TARGET: POLR2A]'
  description: "**status**: released\n\n**biological\\_replicates**: Rep 1, Rep 2,\
    \ Rep 3, Rep 4\n\n**summary**: \n\n**output\\_type**: IDR thresholded peaks\n\n\
    **audit\\_error**: Processed alignments file {ENCFF512QDV|/files/ENCFF512QDV/}\
    \ processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 4053593 usable fragments.\
    \ The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting\
    \ POLR2A-human and investigated as a transcription factor is 10 million usable\
    \ fragments. The recommended value is > 20 million, but > 10 million is acceptable.\
    \ (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} )\n\n**audit\\\
    _error**: Processed alignments file {ENCFF984MAL|/files/ENCFF984MAL/} processed\
    \ by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 4584669 usable fragments. The\
    \ minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting\
    \ POLR2A-human and investigated as a transcription factor is 10 million usable\
    \ fragments. The recommended value is > 20 million, but > 10 million is acceptable.\
    \ (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} )\n\n**audit\\\
    _internal\\_action**: Released analysis {ENCAN069SIA|/analyses/ENCAN069SIA/} has\
    \ in progress subobject document {8f25e1ff-1fcc-4f6e-bde1-c4673abbba81|/documents/8f25e1ff-1fcc-4f6e-bde1-c4673abbba81/}\n\
    \n**audit\\_internal\\_action**: Released analysis {ENCAN069SIA|/analyses/ENCAN069SIA/}\
    \ has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/}\n\
    \n**audit\\_not\\_compliant**: Processed alignments file {ENCFF765ZHF|/files/ENCFF765ZHF/}\
    \ processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 6593003 usable fragments.\
    \ The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting\
    \ POLR2A-human and investigated as a transcription factor is 10 million usable\
    \ fragments. The recommended value is > 20 million, but > 10 million is acceptable.\
    \ (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} )\n\n**audit\\\
    _not\\_compliant**: Processed alignments file {ENCFF270BRF|/files/ENCFF270BRF/}\
    \ processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 8984101 usable fragments.\
    \ The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting\
    \ POLR2A-human and investigated as a transcription factor is 10 million usable\
    \ fragments. The recommended value is > 20 million, but > 10 million is acceptable.\
    \ (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} )\n\n**audit\\\
    _warning**: Replicate concordance in ChIP-seq experiments is measured by calculating\
    \ IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded\
    \ peaks files {ENCFF292PBX|/files/ENCFF292PBX/} processed by ChIP-seq ENCODE4\
    \ v1.6.1 GRCh38 pipeline have a rescue ratio of 1.40 and a self consistency ratio\
    \ of 2.39. According to ENCODE standards, having both rescue ratio and self consistency\
    \ ratio values < 2 is recommended, but having only one of the ratio values < 2\
    \ is acceptable."
  labels:
    reference_genome: hg38/genomes/GRCh38-hg38
    accession: ENCSR000EAU
    status: released
    assay_term_name: ChIP-seq
    simple_biosample_summary: ''
    biosample_summary: Homo sapiens GM18505
    replication_type: isogenic
    biosample_ontology: /biosample-types/cell_line_EFO_0005332/
    perturbed: false
    doi: 10.17989/ENCSR000EAU
    date_created: '2013-12-12T07:01:06.321167+00:00'
    date_released: '2011-10-29'
    submitter_comment: ''
    target: POLR2A
