TF_ChIP-seq_ENCSR000DZC
TF_ChIP-seq ENCSR000DZC [biosample_summary="Homo sapiens GM12878" and target="RCOR1"]
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| Id: | TF_ChIP-seq/ENCSR000DZC |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR000DZC [biosamplesummary="Homo sapiens GM12878" and target="RCOR1"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: optimal IDR thresholded peaks audit_internal_action: Archived analysis {ENCAN851FZR|/analyses/ENCAN851FZR/} has in progress subobject quality standard {encode3-tf-chip|/quality-standards/encode3-tf-chip/} audit_warning: Processed alignments file {ENCFF853WZI|/files/ENCFF853WZI/} processed by ChIP-seq ENCODE3 hg19 pipeline has 12504362 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting RCOR1-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: Processed alignments file {ENCFF106HCF|/files/ENCFF106HCF/} processed by ChIP-seq ENCODE3 hg19 pipeline has 17165514 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting RCOR1-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF898MUV|/files/ENCFF898MUV/}, {ENCFF356JLK|/files/ENCFF356JLK/} processed by ChIP-seq ENCODE3 hg19 pipeline have a rescue ratio of 1.13 and a self consistency ratio of 14.43. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF876SYJ|/files/ENCFF876SYJ/}, {ENCFF134YTH|/files/ENCFF134YTH/} processed by ChIP-seq ENCODE3 hg19 pipeline have a rescue ratio of 1.13 and a self consistency ratio of 14.43. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR000DZC | float |
TF_ChIP-seq_ENCSR000DZC |
TF_ChIP-seq ENCSR000DZC [biosample_summary="Homo sapiens GM12878" and target="RCOR1"]
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[7.01, 304] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF898MUV.bed.gz | 192.55 KB | 590976200dc7a4de06cc75f4f0991b60 |
| ENCFF898MUV.bed.gz.dvc | 100.0 B | e0f96782b2af5b8ef3fa828d353fb84f |
| ENCFF898MUV.tabix.bed.gz | 137.66 KB | b4f0c8fe7a84b97653156c9f9a2d13e9 |
| ENCFF898MUV.tabix.bed.gz.dvc | 106.0 B | cad8eb763dddc3e71dd31ed4efeb1749 |
| ENCFF898MUV.tabix.bed.gz.tbi | 75.08 KB | ba86479b49d59481cf0f8ac4f456d683 |
| ENCFF898MUV.tabix.bed.gz.tbi.dvc | 109.0 B | f509baca9ee79a1eb8c81f823c6db88d |
| genomic_resource.yaml | 3.47 KB | bffe97a3c6d2686a8b2339d372841616 |
| genomic_resource_original.yaml | 3.37 KB | 413a01215f54f7f6b4b56b20233432bf |
| statistics/ |