type: position_score
table:
  filename: ENCFF898MUV.tabix.bed.gz
  header_mode: none
  zero_based: true
  format: tabix
  chrom:
    column_index: 0
  pos_begin:
    column_index: 1
  pos_end:
    column_index: 2
scores:
- id: TF_ChIP-seq_ENCSR000DZC
  column_index: 3
  type: float
  desc: 'TF_ChIP-seq ENCSR000DZC [biosample_summary="Homo sapiens GM12878" and target="RCOR1"]'
  histogram:
    type: number
    number_of_bins: 100
meta:
  summary: 'TF_ChIP-seq ENCSR000DZC [biosample_summary="Homo sapiens GM12878" and target="RCOR1"]'
  description: "**status**: released\n\n**biological\\_replicates**: Rep 1, Rep 2\n\
    \n**summary**: \n\n**output\\_type**: optimal IDR thresholded peaks\n\n**audit\\\
    _internal\\_action**: Archived analysis {ENCAN851FZR|/analyses/ENCAN851FZR/} has\
    \ in progress subobject quality standard {encode3-tf-chip|/quality-standards/encode3-tf-chip/}\n\
    \n**audit\\_warning**: Processed alignments file {ENCFF853WZI|/files/ENCFF853WZI/}\
    \ processed by ChIP-seq ENCODE3 hg19 pipeline has 12504362 usable fragments. The\
    \ minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting\
    \ RCOR1-human and investigated as a transcription factor is 10 million usable\
    \ fragments. The recommended value is > 20 million, but > 10 million is acceptable.\
    \ (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} )\n\n**audit\\\
    _warning**: Processed alignments file {ENCFF106HCF|/files/ENCFF106HCF/} processed\
    \ by ChIP-seq ENCODE3 hg19 pipeline has 17165514 usable fragments. The minimum\
    \ ENCODE standard for each replicate in a ChIP-seq experiment targeting RCOR1-human\
    \ and investigated as a transcription factor is 10 million usable fragments. The\
    \ recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE\
    \ ChIP-seq data standards|/data-standards/chip-seq/} )\n\n**audit\\_warning**:\
    \ Replicate concordance in ChIP-seq experiments is measured by calculating IDR\
    \ values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks\
    \ files {ENCFF898MUV|/files/ENCFF898MUV/}, {ENCFF356JLK|/files/ENCFF356JLK/} processed\
    \ by ChIP-seq ENCODE3 hg19 pipeline have a rescue ratio of 1.13 and a self consistency\
    \ ratio of 14.43. According to ENCODE standards, having both rescue ratio and\
    \ self consistency ratio values < 2 is recommended, but having only one of the\
    \ ratio values < 2 is acceptable.\n\n**audit\\_warning**: Replicate concordance\
    \ in ChIP-seq experiments is measured by calculating IDR values (Irreproducible\
    \ Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF876SYJ|/files/ENCFF876SYJ/},\
    \ {ENCFF134YTH|/files/ENCFF134YTH/} processed by ChIP-seq ENCODE3 hg19 pipeline\
    \ have a rescue ratio of 1.13 and a self consistency ratio of 14.43. According\
    \ to ENCODE standards, having both rescue ratio and self consistency ratio values\
    \ < 2 is recommended, but having only one of the ratio values < 2 is acceptable."
  labels:
    reference_genome: hg38/genomes/GRCh38-hg38
    accession: ENCSR000DZC
    status: released
    assay_term_name: ChIP-seq
    simple_biosample_summary: ''
    biosample_summary: Homo sapiens GM12878
    replication_type: isogenic
    biosample_ontology: /biosample-types/cell_line_EFO_0002784/
    perturbed: false
    doi: 10.17989/ENCSR000DZC
    date_created: '2014-02-12T23:21:28.787275+00:00'
    date_released: '2012-05-14'
    submitter_comment: ''
    target: RCOR1
