TF_ChIP-seq_ENCSR000DUU
TF_ChIP-seq ENCSR000DUU [biosample_summary="Homo sapiens fibroblast of mammary gland female" and target="CTCF"]
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| Id: | TF_ChIP-seq/ENCSR000DUU |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR000DUU [biosamplesummary="Homo sapiens fibroblast of mammary gland female" and target="CTCF"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: female output_type: optimal IDR thresholded peaks audit_internal_action: Archived analysis {ENCAN189SZS|/analyses/ENCAN189SZS/} has in progress subobject quality standard {encode3-tf-chip|/quality-standards/encode3-tf-chip/} audit_not_compliant: Processed alignments file {ENCFF318TMO|/files/ENCFF318TMO/} processed by ChIP-seq ENCODE3 hg19 pipeline has 8127844 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting CTCF-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: Processed alignments file {ENCFF393HXD|/files/ENCFF393HXD/} processed by ChIP-seq ENCODE3 hg19 pipeline has 16961498 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting CTCF-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR000DUU | float |
TF_ChIP-seq_ENCSR000DUU |
TF_ChIP-seq ENCSR000DUU [biosample_summary="Homo sapiens fibroblast of mammary gland female" and target="CTCF"]
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[3.89, 514] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF438XHB.bed.gz | 793.66 KB | f427a82e1ac58a95b8ba78e63a5fed5b |
| ENCFF438XHB.bed.gz.dvc | 100.0 B | eff8714a92a606979b29b6b2ce95ec4e |
| ENCFF438XHB.tabix.bed.gz | 613.34 KB | 1ccaddd17e2919eb6699dda517b63441 |
| ENCFF438XHB.tabix.bed.gz.dvc | 106.0 B | be113f451505aa094d3a0c9e4973cccc |
| ENCFF438XHB.tabix.bed.gz.tbi | 318.03 KB | 8d06a221783c7168715afb8a0df9d609 |
| ENCFF438XHB.tabix.bed.gz.tbi.dvc | 110.0 B | a446991097abf06dc5f23104e207bd47 |
| genomic_resource.yaml | 2.39 KB | 7db497f2993ba7e0dc64d015401171a4 |
| genomic_resource_original.yaml | 2.27 KB | 58daf0fc58ba63bd8764f253adbf7501 |
| statistics/ |