type: position_score
table:
  filename: ENCFF438XHB.tabix.bed.gz
  header_mode: none
  zero_based: true
  format: tabix
  chrom:
    column_index: 0
  pos_begin:
    column_index: 1
  pos_end:
    column_index: 2
scores:
- id: TF_ChIP-seq_ENCSR000DUU
  column_index: 3
  type: float
  desc: 'TF_ChIP-seq ENCSR000DUU [biosample_summary="Homo sapiens fibroblast of mammary gland female" and target="CTCF"]'
  histogram:
    type: number
    number_of_bins: 100
meta:
  summary: 'TF_ChIP-seq ENCSR000DUU [biosample_summary="Homo sapiens fibroblast of mammary gland female" and target="CTCF"]'
  description: '**status**: released


    **biological\_replicates**: Rep 1, Rep 2


    **summary**: female


    **output\_type**: optimal IDR thresholded peaks


    **audit\_internal\_action**: Archived analysis {ENCAN189SZS|/analyses/ENCAN189SZS/}
    has in progress subobject quality standard {encode3-tf-chip|/quality-standards/encode3-tf-chip/}


    **audit\_not\_compliant**: Processed alignments file {ENCFF318TMO|/files/ENCFF318TMO/}
    processed by ChIP-seq ENCODE3 hg19 pipeline has 8127844 usable fragments. The
    minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting
    CTCF-human and investigated as a transcription factor is 10 million usable fragments.
    The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE
    ChIP-seq data standards|/data-standards/chip-seq/} )


    **audit\_warning**: Processed alignments file {ENCFF393HXD|/files/ENCFF393HXD/}
    processed by ChIP-seq ENCODE3 hg19 pipeline has 16961498 usable fragments. The
    minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting
    CTCF-human and investigated as a transcription factor is 10 million usable fragments.
    The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE
    ChIP-seq data standards|/data-standards/chip-seq/} )'
  labels:
    reference_genome: hg38/genomes/GRCh38-hg38
    accession: ENCSR000DUU
    status: released
    assay_term_name: ChIP-seq
    simple_biosample_summary: female
    biosample_summary: Homo sapiens fibroblast of mammary gland female
    replication_type: isogenic
    biosample_ontology: /biosample-types/primary_cell_CL_0002555/
    perturbed: false
    doi: 10.17989/ENCSR000DUU
    date_created: '2013-12-12T06:57:56.882802+00:00'
    date_released: '2011-03-17'
    submitter_comment: ''
    target: CTCF
