TF_ChIP-seq_ENCSR000DJZ
TF_ChIP-seq ENCSR000DJZ [biosample_summary="Homo sapiens K562 stably expressing HDAC8" and target="HDAC8"]
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| Id: | TF_ChIP-seq/ENCSR000DJZ |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR000DJZ [biosamplesummary="Homo sapiens K562 stably expressing HDAC8" and target="HDAC8"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: stably expressing HDAC8 output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN263EYC|/analyses/ENCAN263EYC/} has in progress subobject document {601a9ea1-73fe-4244-9508-f94cebd941d3|/documents/601a9ea1-73fe-4244-9508-f94cebd941d3/} audit_internal_action: Released analysis {ENCAN263EYC|/analyses/ENCAN263EYC/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_not_compliant: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF611FTI|/files/ENCFF611FTI/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline have a rescue ratio of 2.28 and a self consistency ratio of 3.73. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. audit_warning: Processed alignments file {ENCFF696DSL|/files/ENCFF696DSL/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 16811482 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting HDAC8-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR000DJZ | float |
TF_ChIP-seq_ENCSR000DJZ |
TF_ChIP-seq ENCSR000DJZ [biosample_summary="Homo sapiens K562 stably expressing HDAC8" and target="HDAC8"]
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[7.26, 202] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF611FTI.bed.gz | 40.67 KB | 3fd26a9020722b69fd029c94c0530c71 |
| ENCFF611FTI.bed.gz.dvc | 99.0 B | 20c45d8c2c41485108ad9d2d6c2d425b |
| ENCFF611FTI.tabix.bed.gz | 29.73 KB | 5ee6af9cbcf9a9d146f214597a321177 |
| ENCFF611FTI.tabix.bed.gz.dvc | 105.0 B | 90f4f7b74a8f6c643923b1a416b0ae70 |
| ENCFF611FTI.tabix.bed.gz.tbi | 19.63 KB | d538a630a5ab51c0e0d28003bac601a6 |
| ENCFF611FTI.tabix.bed.gz.tbi.dvc | 109.0 B | be037f684d089cfc50c4e4a715014ff5 |
| genomic_resource.yaml | 2.66 KB | feabedd413a922e744bda8ea428b616e |
| genomic_resource_original.yaml | 2.55 KB | d3223bb06c4ddfbc01c4098f5e657532 |
| statistics/ |