type: position_score
table:
  filename: ENCFF611FTI.tabix.bed.gz
  header_mode: none
  zero_based: true
  format: tabix
  chrom:
    column_index: 0
  pos_begin:
    column_index: 1
  pos_end:
    column_index: 2
scores:
- id: TF_ChIP-seq_ENCSR000DJZ
  column_index: 3
  type: float
  desc: signal
  histogram:
    type: number
    number_of_bins: 100
meta:
  summary: 'ChIP-seq ENCSR000DJZ [TISSUE: Homo sapiens K562 stably expressing HDAC8,
    TARGET: HDAC8]'
  description: '**status**: released


    **biological\_replicates**: Rep 1, Rep 2


    **summary**: stably expressing HDAC8


    **output\_type**: IDR thresholded peaks


    **audit\_internal\_action**: Released analysis {ENCAN263EYC|/analyses/ENCAN263EYC/}
    has in progress subobject document {601a9ea1-73fe-4244-9508-f94cebd941d3|/documents/601a9ea1-73fe-4244-9508-f94cebd941d3/}


    **audit\_internal\_action**: Released analysis {ENCAN263EYC|/analyses/ENCAN263EYC/}
    has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/}


    **audit\_not\_compliant**: Replicate concordance in ChIP-seq experiments is measured
    by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR
    thresholded peaks files {ENCFF611FTI|/files/ENCFF611FTI/} processed by ChIP-seq
    ENCODE4 v1.6.1 GRCh38 pipeline have a rescue ratio of 2.28 and a self consistency
    ratio of 3.73. According to ENCODE standards, having both rescue ratio and self
    consistency ratio values < 2 is recommended, but having only one of the ratio
    values < 2 is acceptable.


    **audit\_warning**: Processed alignments file {ENCFF696DSL|/files/ENCFF696DSL/}
    processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 16811482 usable fragments.
    The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting
    HDAC8-human and investigated as a transcription factor is 10 million usable fragments.
    The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE
    ChIP-seq data standards|/data-standards/chip-seq/} )'
  labels:
    reference_genome: hg38/genomes/GRCh38-hg38
    accession: ENCSR000DJZ
    status: released
    assay_term_name: ChIP-seq
    simple_biosample_summary: stably expressing HDAC8
    biosample_summary: Homo sapiens K562 stably expressing HDAC8
    replication_type: isogenic
    biosample_ontology: /biosample-types/cell_line_EFO_0002067/
    perturbed: false
    doi: 10.17989/ENCSR000DJZ
    date_created: '2014-02-12T23:27:48.714804+00:00'
    date_released: '2011-06-03'
    submitter_comment: ''
    target: HDAC8
