TF_ChIP-seq_ENCSR000BTZ
TF_ChIP-seq ENCSR000BTZ [biosample_summary="Homo sapiens SK-N-SH" and target="USF1"]
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| Id: | TF_ChIP-seq/ENCSR000BTZ |
| Type: | position_score |
| Version: | 0 |
| Summary: |
TFChIP-seq ENCSR000BTZ [biosamplesummary="Homo sapiens SK-N-SH" and target="USF1"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: IDR thresholded peaks audit_internal_action: Released analysis {ENCAN123NMN|/analyses/ENCAN123NMN/} has in progress subobject document {1683d180-faed-4bb2-be19-42ea4f349fae|/documents/1683d180-faed-4bb2-be19-42ea4f349fae/} audit_internal_action: Released analysis {ENCAN123NMN|/analyses/ENCAN123NMN/} has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/} audit_warning: Processed alignments file {ENCFF084WXO|/files/ENCFF084WXO/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline has 17365642 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting USF1-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: Processed alignments file {ENCFF975WAN|/files/ENCFF975WAN/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline has 18526069 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting USF1-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF914HSC|/files/ENCFF914HSC/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline have a rescue ratio of 1.84 and a self consistency ratio of 2.31. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. audit_warning: Replicate concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF967PDP|/files/ENCFF967PDP/} processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline have a rescue ratio of 1.84 and a self consistency ratio of 2.31. According to ENCODE standards, having both rescue ratio and self consistency ratio values < 2 is recommended, but having only one of the ratio values < 2 is acceptable. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| TF_ChIP-seq_ENCSR000BTZ | float |
TF_ChIP-seq_ENCSR000BTZ |
TF_ChIP-seq ENCSR000BTZ [biosample_summary="Homo sapiens SK-N-SH" and target="USF1"]
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[4.35, 730] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF914HSC.bed.gz | 218.56 KB | ea1586a3bcfb129452ccfd0eff01da63 |
| ENCFF914HSC.bed.gz.dvc | 100.0 B | 34f9dfdb4ea7eef009bcd493b69ec5e3 |
| ENCFF914HSC.tabix.bed.gz | 149.62 KB | eb20f72597a83ed8b682b217c181de0e |
| ENCFF914HSC.tabix.bed.gz.dvc | 106.0 B | 4deb8029626e407954814c4d0de304b5 |
| ENCFF914HSC.tabix.bed.gz.tbi | 99.28 KB | d08271b8e31585deba1fe26ac6beacab |
| ENCFF914HSC.tabix.bed.gz.tbi.dvc | 110.0 B | 871942a345f832b443ce895ae7792fe3 |
| genomic_resource.yaml | 3.64 KB | 2c7778b9ab27063efcda7e670fd3dff4 |
| genomic_resource_original.yaml | 3.55 KB | 17b0919c21e1e50501c0eff6dd6e4bec |
| statistics/ |