type: position_score
table:
  filename: ENCFF914HSC.tabix.bed.gz
  header_mode: none
  zero_based: true
  format: tabix
  chrom:
    column_index: 0
  pos_begin:
    column_index: 1
  pos_end:
    column_index: 2
scores:
- id: TF_ChIP-seq_ENCSR000BTZ
  column_index: 3
  type: float
  desc: signal
  histogram:
    type: number
    number_of_bins: 100
meta:
  summary: 'ChIP-seq ENCSR000BTZ [TISSUE: Homo sapiens SK-N-SH, TARGET: USF1]'
  description: "**status**: released\n\n**biological\\_replicates**: Rep 1, Rep 2\n\
    \n**summary**: \n\n**output\\_type**: IDR thresholded peaks\n\n**audit\\_internal\\\
    _action**: Released analysis {ENCAN123NMN|/analyses/ENCAN123NMN/} has in progress\
    \ subobject document {1683d180-faed-4bb2-be19-42ea4f349fae|/documents/1683d180-faed-4bb2-be19-42ea4f349fae/}\n\
    \n**audit\\_internal\\_action**: Released analysis {ENCAN123NMN|/analyses/ENCAN123NMN/}\
    \ has in progress subobject quality standard {encode4-tf-chip|/quality-standards/encode4-tf-chip/}\n\
    \n**audit\\_warning**: Processed alignments file {ENCFF084WXO|/files/ENCFF084WXO/}\
    \ processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline has 17365642 usable fragments.\
    \ The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting\
    \ USF1-human and investigated as a transcription factor is 10 million usable fragments.\
    \ The recommended value is > 20 million, but > 10 million is acceptable. (See\
    \ {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} )\n\n**audit\\_warning**:\
    \ Processed alignments file {ENCFF975WAN|/files/ENCFF975WAN/} processed by ChIP-seq\
    \ ENCODE4 v1.4.0 GRCh38 pipeline has 18526069 usable fragments. The minimum ENCODE\
    \ standard for each replicate in a ChIP-seq experiment targeting USF1-human and\
    \ investigated as a transcription factor is 10 million usable fragments. The recommended\
    \ value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq\
    \ data standards|/data-standards/chip-seq/} )\n\n**audit\\_warning**: Replicate\
    \ concordance in ChIP-seq experiments is measured by calculating IDR values (Irreproducible\
    \ Discovery Rate). ENCODE processed IDR thresholded peaks files {ENCFF914HSC|/files/ENCFF914HSC/}\
    \ processed by ChIP-seq ENCODE4 v1.4.0 GRCh38 pipeline have a rescue ratio of\
    \ 1.84 and a self consistency ratio of 2.31. According to ENCODE standards, having\
    \ both rescue ratio and self consistency ratio values < 2 is recommended, but\
    \ having only one of the ratio values < 2 is acceptable.\n\n**audit\\_warning**:\
    \ Replicate concordance in ChIP-seq experiments is measured by calculating IDR\
    \ values (Irreproducible Discovery Rate). ENCODE processed IDR thresholded peaks\
    \ files {ENCFF967PDP|/files/ENCFF967PDP/} processed by ChIP-seq ENCODE4 v1.4.0\
    \ GRCh38 pipeline have a rescue ratio of 1.84 and a self consistency ratio of\
    \ 2.31. According to ENCODE standards, having both rescue ratio and self consistency\
    \ ratio values < 2 is recommended, but having only one of the ratio values < 2\
    \ is acceptable."
  labels:
    reference_genome: hg38/genomes/GRCh38-hg38
    accession: ENCSR000BTZ
    status: released
    assay_term_name: ChIP-seq
    simple_biosample_summary: ''
    biosample_summary: Homo sapiens SK-N-SH
    replication_type: isogenic
    biosample_ontology: /biosample-types/cell_line_EFO_0003072/
    perturbed: false
    doi: 10.17989/ENCSR000BTZ
    date_created: '2013-09-13T16:52:28.930274-08:00'
    date_released: '2012-09-10'
    submitter_comment: ''
    target: USF1
