Resource

Id Histone_ChIP-seq/ENCSR813CTIcontent_copy
Type position_score
Version 0
Summary Histone_ChIP-seq ENCSR813CTI [biosample_summary="Homo sapiens H1" and target="H3K9ac"]
Description
Labels
  • accession: ENCSR813CTI
  • assay_term_name: ChIP-seq
  • biosample_ontology: /biosample-types/cell_line_EFO_0003042/
  • biosample_summary: Homo sapiens H1
  • date_created: 2015-09-15T20:27:05.563212+00:00
  • date_released: 2013-07-31
  • doi: 10.17989/ENCSR813CTI
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary:
  • status: released
  • submitter_comment: This experiment’s alignments have been cropped to 50nt for consistency against its control experiment.
  • target: H3K9ac

Scores (1)

ID Type Default annotation Description Histogram Range Summary
Histone_ChIP-seq_ENCSR813CTI float

Histone_ChIP-seq_ENCSR813CTI

Histone_ChIP-seq ENCSR813CTI [biosample_summary="Homo sapiens H1" and target="H3K9ac"]
HISTOGRAM FOR Histone_ChIP-seq_ENCSR813CTI [2.25, 31.9]
n
10,302,131
mean
7.19
sd
3.69

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 103021310.32% 31436
chr1 1037336 0.42% 3168
chr2 789690 0.33% 2732
chr3 662708 0.33% 2377
chr4 516942 0.27% 1985
chr5 581393 0.32% 2098
chr6 605046 0.35% 1459
chr7 466380 0.29% 1148
chr8 350565 0.24% 919
chr9 361366 0.26% 907
chr10 422192 0.32% 1382
chr11 538639 0.40% 1715
chr12 579046 0.43% 1814
chr13 266187 0.23% 996
chr14 376803 0.35% 1165
chr15 330097 0.32% 1004
chr16 407007 0.45% 1057
chr17 515377 0.62% 1329
chr18 201397 0.25% 747
chr19 522139 0.89% 1284
chr20 263551 0.41% 742
chr21 97663 0.21% 303
chr22 192853 0.38% 477
chrX 210527 0.13% 609
chrY 7227 0.01% 19
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 31436 105 3084 327.72 212
global segment-length histogram

Files

Filename Size md5
ENCFF754YLR.bed.gz 632.07 KB 037140921ed30892a85b9e477363a1c3
ENCFF754YLR.tabix.bed.gz 304.57 KB b7f23a7f78a2f2bc256119d4ee86b852
ENCFF754YLR.tabix.bed.gz.tbi 178.19 KB 186dc9fe00278930192e52eb2ced64f8
genomic_resource.yaml 2.19 KB 925d2763659893b7304ce36deeda522e
statistics/