Resource
| Id | Histone_ChIP-seq/ENCSR813CTI |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR813CTI [biosample_summary="Homo sapiens H1" and target="H3K9ac"] |
| Description |
status: released biological_replicates: Rep 1 summary: output_type: pseudoreplicated peaks audit_error: Processed alignments file {ENCFF716HFX|/files/ENCFF716HFX/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 4406422 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K9ac-human and investigated as a narrow histone mark is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_internal_action: Released analysis {ENCAN132GER|/analyses/ENCAN132GER/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_internal_action: Released analysis {ENCAN132GER|/analyses/ENCAN132GER/} has in progress subobject document {ba4bf327-5672-4603-95ac-22e65f4097f8|/documents/ba4bf327-5672-4603-95ac-22e65f4097f8/} |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR813CTI | float |
Histone_ChIP-seq_ENCSR813CTI |
Histone_ChIP-seq ENCSR813CTI [biosample_summary="Homo sapiens H1" and target="H3K9ac"]
|
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[2.25, 31.9] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 10302131 | 0.32% | 31436 |
| chr1 | 1037336 | 0.42% | 3168 |
| chr2 | 789690 | 0.33% | 2732 |
| chr3 | 662708 | 0.33% | 2377 |
| chr4 | 516942 | 0.27% | 1985 |
| chr5 | 581393 | 0.32% | 2098 |
| chr6 | 605046 | 0.35% | 1459 |
| chr7 | 466380 | 0.29% | 1148 |
| chr8 | 350565 | 0.24% | 919 |
| chr9 | 361366 | 0.26% | 907 |
| chr10 | 422192 | 0.32% | 1382 |
| chr11 | 538639 | 0.40% | 1715 |
| chr12 | 579046 | 0.43% | 1814 |
| chr13 | 266187 | 0.23% | 996 |
| chr14 | 376803 | 0.35% | 1165 |
| chr15 | 330097 | 0.32% | 1004 |
| chr16 | 407007 | 0.45% | 1057 |
| chr17 | 515377 | 0.62% | 1329 |
| chr18 | 201397 | 0.25% | 747 |
| chr19 | 522139 | 0.89% | 1284 |
| chr20 | 263551 | 0.41% | 742 |
| chr21 | 97663 | 0.21% | 303 |
| chr22 | 192853 | 0.38% | 477 |
| chrX | 210527 | 0.13% | 609 |
| chrY | 7227 | 0.01% | 19 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 31436 | 105 | 3084 | 327.72 | 212 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF754YLR.bed.gz | 632.07 KB | 037140921ed30892a85b9e477363a1c3 |
| ENCFF754YLR.tabix.bed.gz | 304.57 KB | b7f23a7f78a2f2bc256119d4ee86b852 |
| ENCFF754YLR.tabix.bed.gz.tbi | 178.19 KB | 186dc9fe00278930192e52eb2ced64f8 |
| genomic_resource.yaml | 2.19 KB | 925d2763659893b7304ce36deeda522e |
| statistics/ |
