Resource
| Id | Histone_ChIP-seq/ENCSR516KSY |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR516KSY [biosample_summary="Homo sapiens H9 stably expressing HES5" and target="H3K9me3"] |
| Description |
status: released biological_replicates: Rep 1, Rep 2 summary: stably expressing C-terminal eGFP-tagged HES5 output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN331XVJ|/analyses/ENCAN331XVJ/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_internal_action: Released analysis {ENCAN331XVJ|/analyses/ENCAN331XVJ/} has in progress subobject document {64024907-19d8-4c45-8bf9-869d4b5ab7db|/documents/64024907-19d8-4c45-8bf9-869d4b5ab7db/} audit_not_compliant: Processed unfiltered alignments file {ENCFF260JGU|/files/ENCFF260JGU/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 25051464 mapped reads. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K9me3-human and investigated as a broad histone mark is 35 million mapped reads. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_warning: Processed unfiltered alignments file {ENCFF360AAU|/files/ENCFF360AAU/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 41877987 mapped reads. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K9me3-human and investigated as a broad histone mark is 35 million mapped reads. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR516KSY | float |
Histone_ChIP-seq_ENCSR516KSY |
Histone_ChIP-seq ENCSR516KSY [biosample_summary="Homo sapiens H9 stably expressing HES5" and target="H3K9me3"]
|
 |
[1.74, 10.6] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 31947401 | 0.99% | 51357 |
| chr1 | 3004203 | 1.21% | 4189 |
| chr2 | 1197271 | 0.49% | 2046 |
| chr3 | 618917 | 0.31% | 1139 |
| chr4 | 789042 | 0.41% | 1373 |
| chr5 | 705360 | 0.39% | 1263 |
| chr6 | 639547 | 0.37% | 1163 |
| chr7 | 1529207 | 0.96% | 2418 |
| chr8 | 1958191 | 1.35% | 2621 |
| chr9 | 987755 | 0.71% | 1468 |
| chr10 | 1233578 | 0.92% | 1921 |
| chr11 | 1279461 | 0.95% | 2017 |
| chr12 | 1117484 | 0.84% | 1624 |
| chr13 | 517318 | 0.45% | 856 |
| chr14 | 1271743 | 1.19% | 1783 |
| chr15 | 818315 | 0.80% | 1207 |
| chr16 | 973146 | 1.08% | 1360 |
| chr17 | 718526 | 0.86% | 1038 |
| chr18 | 298409 | 0.37% | 546 |
| chr19 | 3652979 | 6.23% | 5063 |
| chr20 | 959352 | 1.49% | 1330 |
| chr21 | 606223 | 1.30% | 893 |
| chr22 | 578868 | 1.14% | 880 |
| chrX | 6490944 | 4.16% | 13154 |
| chrY | 1562 | <0.01% | 5 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 51357 | 200 | 12511 | 622.07 | 507 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF724VHG.bed.gz | 905.17 KB | da754663dbb7d2273c596ad082b00593 |
| ENCFF724VHG.tabix.bed.gz | 476.78 KB | 5225038945e335801a8a6991759cec67 |
| ENCFF724VHG.tabix.bed.gz.tbi | 156.04 KB | e88560a7317efb3a117ee7db74e30996 |
| genomic_resource.yaml | 2.7 KB | fa0c459a2405c4f341000033434cb366 |
| statistics/ |