type: position_score
table:
  filename: ENCFF724VHG.tabix.bed.gz
  header_mode: none
  zero_based: true
  format: tabix
  chrom:
    column_index: 0
  pos_begin:
    column_index: 1
  pos_end:
    column_index: 2
scores:
- id: Histone_ChIP-seq_ENCSR516KSY
  column_index: 3
  type: float
  desc: signal
  histogram:
    type: number
    number_of_bins: 100
meta:
  summary: 'ChIP-seq ENCSR516KSY [TISSUE: Homo sapiens H9 stably expressing HES5,
    TARGET: H3K9me3]'
  description: '**status**: released


    **biological\_replicates**: Rep 1, Rep 2


    **summary**: stably expressing C-terminal eGFP-tagged HES5


    **output\_type**: pseudoreplicated peaks


    **audit\_internal\_action**: Released analysis {ENCAN331XVJ|/analyses/ENCAN331XVJ/}
    has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/}


    **audit\_internal\_action**: Released analysis {ENCAN331XVJ|/analyses/ENCAN331XVJ/}
    has in progress subobject document {64024907-19d8-4c45-8bf9-869d4b5ab7db|/documents/64024907-19d8-4c45-8bf9-869d4b5ab7db/}


    **audit\_not\_compliant**: Processed unfiltered alignments file {ENCFF260JGU|/files/ENCFF260JGU/}
    processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 25051464 mapped reads.
    The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting
    H3K9me3-human and investigated as a broad histone mark is 35 million mapped reads.
    The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE
    ChIP-seq data standards|/data-standards/chip-seq/})


    **audit\_warning**: Processed unfiltered alignments file {ENCFF360AAU|/files/ENCFF360AAU/}
    processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 41877987 mapped reads.
    The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting
    H3K9me3-human and investigated as a broad histone mark is 35 million mapped reads.
    The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE
    ChIP-seq data standards|/data-standards/chip-seq/})'
  labels:
    reference_genome: hg38/genomes/GRCh38-hg38
    accession: ENCSR516KSY
    status: released
    assay_term_name: ChIP-seq
    simple_biosample_summary: stably expressing C-terminal eGFP-tagged HES5
    biosample_summary: Homo sapiens H9 stably expressing HES5
    replication_type: isogenic
    biosample_ontology: /biosample-types/cell_line_EFO_0003045/
    perturbed: false
    doi: 10.17989/ENCSR516KSY
    date_created: '2015-10-02T22:23:55.698598+00:00'
    date_released: '2016-05-20'
    submitter_comment: ''
    target: H3K9me3
