Resource
| Id | Histone_ChIP-seq/ENCSR442DGE |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR442DGE [biosample_summary="Homo sapiens H1" and target="H3K79me1"] |
| Description |
status: released biological_replicates: Rep 1, Rep 3 summary: output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN458KFC|/analyses/ENCAN458KFC/} has in progress subobject document {8c7261b4-c230-4291-a833-77578ca69477|/documents/8c7261b4-c230-4291-a833-77578ca69477/} audit_internal_action: Released analysis {ENCAN458KFC|/analyses/ENCAN458KFC/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_warning: Processed alignments file {ENCFF341KSR|/files/ENCFF341KSR/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 11460222 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K79me1-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) audit_warning: Processed alignments file {ENCFF535GVC|/files/ENCFF535GVC/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 16014785 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K79me1-human and investigated as a transcription factor is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} ) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR442DGE | float |
Histone_ChIP-seq_ENCSR442DGE |
Histone_ChIP-seq ENCSR442DGE [biosample_summary="Homo sapiens H1" and target="H3K79me1"]
|
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[1.85, 16.6] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 13431960 | 0.42% | 38618 |
| chr1 | 1250815 | 0.50% | 3598 |
| chr2 | 953161 | 0.39% | 2757 |
| chr3 | 678799 | 0.34% | 2035 |
| chr4 | 389259 | 0.20% | 1190 |
| chr5 | 546494 | 0.30% | 1596 |
| chr6 | 610644 | 0.36% | 1876 |
| chr7 | 676305 | 0.42% | 2043 |
| chr8 | 548522 | 0.38% | 1595 |
| chr9 | 685581 | 0.50% | 1951 |
| chr10 | 611426 | 0.46% | 1759 |
| chr11 | 638739 | 0.47% | 1850 |
| chr12 | 531448 | 0.40% | 1599 |
| chr13 | 295059 | 0.26% | 858 |
| chr14 | 446458 | 0.42% | 1302 |
| chr15 | 424091 | 0.42% | 1225 |
| chr16 | 775228 | 0.86% | 2138 |
| chr17 | 779021 | 0.94% | 2160 |
| chr18 | 218902 | 0.27% | 687 |
| chr19 | 1057386 | 1.80% | 2726 |
| chr20 | 489615 | 0.76% | 1375 |
| chr21 | 169446 | 0.36% | 488 |
| chr22 | 589487 | 1.16% | 1613 |
| chrX | 64285 | 0.04% | 189 |
| chrY | 1789 | <0.01% | 8 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 38618 | 168 | 2324 | 347.82 | 296 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF088PTH.bed.gz | 713.99 KB | 871a24d2369a317e1b1d31f7bae960fe |
| ENCFF088PTH.tabix.bed.gz | 372.78 KB | 38d0cf751da03ab797a3febca8849416 |
| ENCFF088PTH.tabix.bed.gz.tbi | 130.59 KB | 0ae629319027669a0d86434aeafa3399 |
| genomic_resource.yaml | 2.71 KB | b3b41b8af6776bcd1c21f6111adfe5d8 |
| statistics/ |
