type: position_score
table:
  filename: ENCFF088PTH.tabix.bed.gz
  header_mode: none
  zero_based: true
  format: tabix
  chrom:
    column_index: 0
  pos_begin:
    column_index: 1
  pos_end:
    column_index: 2
scores:
- id: Histone_ChIP-seq_ENCSR442DGE
  column_index: 3
  type: float
  desc: 'Histone_ChIP-seq ENCSR442DGE [biosample_summary="Homo sapiens H1" and target="H3K79me1"]'
  histogram:
    type: number
    number_of_bins: 100
meta:
  summary: 'Histone_ChIP-seq ENCSR442DGE [biosample_summary="Homo sapiens H1" and target="H3K79me1"]'
  description: "**status**: released\n\n**biological\\_replicates**: Rep 1, Rep 3\n\
    \n**summary**: \n\n**output\\_type**: pseudoreplicated peaks\n\n**audit\\_internal\\\
    _action**: Released analysis {ENCAN458KFC|/analyses/ENCAN458KFC/} has in progress\
    \ subobject document {8c7261b4-c230-4291-a833-77578ca69477|/documents/8c7261b4-c230-4291-a833-77578ca69477/}\n\
    \n**audit\\_internal\\_action**: Released analysis {ENCAN458KFC|/analyses/ENCAN458KFC/}\
    \ has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/}\n\
    \n**audit\\_warning**: Processed alignments file {ENCFF341KSR|/files/ENCFF341KSR/}\
    \ processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 11460222 usable fragments.\
    \ The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting\
    \ H3K79me1-human and investigated as a transcription factor is 10 million usable\
    \ fragments. The recommended value is > 20 million, but > 10 million is acceptable.\
    \ (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} )\n\n**audit\\\
    _warning**: Processed alignments file {ENCFF535GVC|/files/ENCFF535GVC/} processed\
    \ by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 16014785 usable fragments. The\
    \ minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting\
    \ H3K79me1-human and investigated as a transcription factor is 10 million usable\
    \ fragments. The recommended value is > 20 million, but > 10 million is acceptable.\
    \ (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/} )"
  labels:
    reference_genome: hg38/genomes/GRCh38-hg38
    accession: ENCSR442DGE
    status: released
    assay_term_name: ChIP-seq
    simple_biosample_summary: ''
    biosample_summary: Homo sapiens H1
    replication_type: isogenic
    biosample_ontology: /biosample-types/cell_line_EFO_0003042/
    perturbed: false
    doi: 10.17989/ENCSR442DGE
    date_created: '2015-10-01T07:16:11.339607+00:00'
    date_released: '2013-07-31'
    submitter_comment: Additional reads were identified for replicate 1 after the
      processing was done.  We made reprocessing a low priority.
    target: H3K79me1
