Resource
| Id | Histone_ChIP-seq/ENCSR157FDN |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR157FDN [biosample_summary="Homo sapiens large intestine tissue male embryo (108 days)" and target="H3K27me3"] |
| Description |
status: released biological_replicates: Rep 1, Rep 2 summary: male embryo (108 days) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN682KJR|/analyses/ENCAN682KJR/} has in progress subobject document {c938961a-3645-495c-b6c3-1f8a74f17539|/documents/c938961a-3645-495c-b6c3-1f8a74f17539/} audit_internal_action: Released analysis {ENCAN682KJR|/analyses/ENCAN682KJR/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_not_compliant: Processed alignments file {ENCFF432AOX|/files/ENCFF432AOX/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 24898731 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K27me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_not_compliant: Processed alignments file {ENCFF010MHN|/files/ENCFF010MHN/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline has 19147236 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K27me3-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR157FDN | float |
Histone_ChIP-seq_ENCSR157FDN |
Histone_ChIP-seq ENCSR157FDN [biosample_summary="Homo sapiens large intestine tissue male embryo (108 days)" and target="H3K27me3"]
|
 |
[1.8, 31.2] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 49162936 | 1.53% | 76024 |
| chr1 | 4837859 | 1.94% | 7595 |
| chr2 | 3952387 | 1.63% | 6421 |
| chr3 | 2253330 | 1.14% | 3931 |
| chr4 | 1773955 | 0.93% | 2600 |
| chr5 | 2908711 | 1.60% | 4529 |
| chr6 | 2980462 | 1.74% | 4587 |
| chr7 | 2381024 | 1.49% | 3661 |
| chr8 | 1936563 | 1.33% | 3206 |
| chr9 | 2203458 | 1.59% | 3251 |
| chr10 | 2652435 | 1.98% | 4077 |
| chr11 | 2865723 | 2.12% | 4716 |
| chr12 | 2404577 | 1.80% | 3775 |
| chr13 | 1108042 | 0.97% | 1786 |
| chr14 | 1476109 | 1.38% | 2328 |
| chr15 | 1769174 | 1.73% | 2878 |
| chr16 | 1670962 | 1.85% | 2461 |
| chr17 | 3027790 | 3.64% | 4266 |
| chr18 | 828723 | 1.03% | 1405 |
| chr19 | 2237739 | 3.82% | 2770 |
| chr20 | 1944576 | 3.02% | 2968 |
| chr21 | 443076 | 0.95% | 688 |
| chr22 | 977892 | 1.92% | 1481 |
| chrX | 525912 | 0.34% | 639 |
| chrY | 2457 | <0.01% | 5 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 76024 | 158 | 31600 | 646.68 | 380 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF459CYV.bed.gz | 1.43 MB | 752c962c024048db1725ad9bb05a0943 |
| ENCFF459CYV.tabix.bed.gz | 736.93 KB | f78df3dc455403067056917f605aba3f |
| ENCFF459CYV.tabix.bed.gz.tbi | 176.28 KB | ebe55f92c702dc5ba90b63394f8663e3 |
| genomic_resource.yaml | 2.72 KB | 285f3c1020586ff8ab3cf50f5d7b9737 |
| statistics/ |