Resource
| Id | Histone_ChIP-seq/ENCSR113FMX |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR113FMX [biosample_summary="Homo sapiens T-cell" and target="H3K4me1"] |
| Description |
status: released biological_replicates: Rep 1, Rep 2 summary: output_type: pseudoreplicated peaks audit_error: Processed redacted alignments file {ENCFF504BDF|/files/ENCFF504BDF/} processed by ChIP-seq ENCODE4 v1.7.0 GRCh38 pipeline has 4029431 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K4me1-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_internal_action: Released analysis {ENCAN453FQE|/analyses/ENCAN453FQE/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_not_compliant: Processed redacted alignments file {ENCFF280QBS|/files/ENCFF280QBS/} processed by ChIP-seq ENCODE4 v1.7.0 GRCh38 pipeline has 7641027 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K4me1-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR113FMX | float |
Histone_ChIP-seq_ENCSR113FMX |
Histone_ChIP-seq ENCSR113FMX [biosample_summary="Homo sapiens T-cell" and target="H3K4me1"]
|
 |
[2.1, 20.7] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 52992901 | 1.65% | 102357 |
| chr1 | 5466606 | 2.20% | 10200 |
| chr2 | 4961861 | 2.05% | 9133 |
| chr3 | 3574921 | 1.80% | 6779 |
| chr4 | 2231808 | 1.17% | 4277 |
| chr5 | 2847478 | 1.57% | 5430 |
| chr6 | 3512756 | 2.06% | 6733 |
| chr7 | 2418543 | 1.52% | 4808 |
| chr8 | 2128240 | 1.47% | 4136 |
| chr9 | 1952513 | 1.41% | 3818 |
| chr10 | 2496657 | 1.87% | 4811 |
| chr11 | 2601698 | 1.93% | 4772 |
| chr12 | 2866383 | 2.15% | 5683 |
| chr13 | 1375333 | 1.20% | 2646 |
| chr14 | 2142200 | 2.00% | 3890 |
| chr15 | 1841195 | 1.81% | 3443 |
| chr16 | 1595685 | 1.77% | 3191 |
| chr17 | 2641105 | 3.17% | 5212 |
| chr18 | 915665 | 1.14% | 1835 |
| chr19 | 1624956 | 2.77% | 3596 |
| chr20 | 1249206 | 1.94% | 2465 |
| chr21 | 726274 | 1.55% | 1377 |
| chr22 | 997226 | 1.96% | 1926 |
| chrX | 824592 | 0.53% | 2196 |
| 3343 contigs with no values (186304500 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 102357 | 158 | 11235 | 517.73 | 358 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF598AFF.bed.gz | 1.75 MB | 17130fab9376cfa156dbf4956f8b59b5 |
| ENCFF598AFF.tabix.bed.gz | 955.81 KB | 49c26df33a336450a035eac8db86c3a4 |
| ENCFF598AFF.tabix.bed.gz.tbi | 231.3 KB | c14d0fa094d279b617c3dfe73addd191 |
| genomic_resource.yaml | 2.47 KB | 7cc3f98f9f02b5b484831fe8cba8d75a |
| statistics/ |