type: position_score
table:
  filename: ENCFF598AFF.tabix.bed.gz
  header_mode: none
  zero_based: true
  format: tabix
  chrom:
    column_index: 0
  pos_begin:
    column_index: 1
  pos_end:
    column_index: 2
scores:
- id: Histone_ChIP-seq_ENCSR113FMX
  column_index: 3
  type: float
  desc: 'Histone_ChIP-seq ENCSR113FMX [biosample_summary="Homo sapiens T-cell" and target="H3K4me1"]'
  histogram:
    type: number
    number_of_bins: 100
meta:
  summary: 'Histone_ChIP-seq ENCSR113FMX [biosample_summary="Homo sapiens T-cell" and target="H3K4me1"]'
  description: "**status**: released\n\n**biological\\_replicates**: Rep 1, Rep 2\n\
    \n**summary**: \n\n**output\\_type**: pseudoreplicated peaks\n\n**audit\\_error**:\
    \ Processed redacted alignments file {ENCFF504BDF|/files/ENCFF504BDF/} processed\
    \ by ChIP-seq ENCODE4 v1.7.0 GRCh38 pipeline has 4029431 usable fragments. The\
    \ minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting\
    \ H3K4me1-human and investigated as a broad histone mark is 20 million usable\
    \ fragments. The recommended value is > 45 million, but > 35 million is acceptable.\
    \ (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/})\n\n**audit\\\
    _internal\\_action**: Released analysis {ENCAN453FQE|/analyses/ENCAN453FQE/} has\
    \ in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/}\n\
    \n**audit\\_not\\_compliant**: Processed redacted alignments file {ENCFF280QBS|/files/ENCFF280QBS/}\
    \ processed by ChIP-seq ENCODE4 v1.7.0 GRCh38 pipeline has 7641027 usable fragments.\
    \ The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting\
    \ H3K4me1-human and investigated as a broad histone mark is 20 million usable\
    \ fragments. The recommended value is > 45 million, but > 35 million is acceptable.\
    \ (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/})"
  labels:
    reference_genome: hg38/genomes/GRCh38-hg38
    accession: ENCSR113FMX
    status: released
    assay_term_name: ChIP-seq
    simple_biosample_summary: ''
    biosample_summary: Homo sapiens T-cell
    replication_type: anisogenic
    biosample_ontology: /biosample-types/primary_cell_CL_0000084/
    perturbed: false
    doi: 10.17989/ENCSR113FMX
    date_created: '2015-09-15T19:47:08.478921+00:00'
    date_released: '2013-07-31'
    submitter_comment: Experiment 9c14412f-bccd-4c78-b899-9ab601667a00 merged into
      base.
    target: H3K4me1
