Resource
| Id | Histone_ChIP-seq/ENCSR023MFG |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR023MFG [biosample_summary="Homo sapiens skeletal muscle satellite cell female adult originated from mesodermal cell" and target="H3K4me1"] |
| Description |
status: released biological_replicates: Rep 1, Rep 3 summary: female adult output_type: replicated peaks audit_internal_action: Archived analysis {ENCAN989MDJ|/analyses/ENCAN989MDJ/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_not_compliant: Processed redacted alignments file {ENCFF647TSZ|/files/ENCFF647TSZ/} processed by ChIP-seq ENCODE3 hg19 pipeline has 17274025 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K4me1-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_not_compliant: Processed redacted alignments file {ENCFF367QMK|/files/ENCFF367QMK/} processed by ChIP-seq ENCODE3 hg19 pipeline has 21770509 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H3K4me1-human and investigated as a broad histone mark is 20 million usable fragments. The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR023MFG | float |
Histone_ChIP-seq_ENCSR023MFG |
Histone_ChIP-seq ENCSR023MFG [biosample_summary="Homo sapiens skeletal muscle satellite cell female adult originated from mesodermal cell" and target="H3K4me1"]
|
 |
[1.59, 27.1] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 144510952 | 4.49% | 168999 |
| chr1 | 13347437 | 5.36% | 15336 |
| chr2 | 13021136 | 5.38% | 14651 |
| chr3 | 10325224 | 5.21% | 12061 |
| chr4 | 7588566 | 3.99% | 9268 |
| chr5 | 8672175 | 4.78% | 9967 |
| chr6 | 9100444 | 5.33% | 10777 |
| chr7 | 7165563 | 4.50% | 8646 |
| chr8 | 6830621 | 4.71% | 8070 |
| chr9 | 6566900 | 4.75% | 7476 |
| chr10 | 6961312 | 5.20% | 8051 |
| chr11 | 7525405 | 5.57% | 8445 |
| chr12 | 7547954 | 5.66% | 8838 |
| chr13 | 4368227 | 3.82% | 5104 |
| chr14 | 4546148 | 4.25% | 5214 |
| chr15 | 4961344 | 4.86% | 5613 |
| chr16 | 4057452 | 4.49% | 4733 |
| chr17 | 5890294 | 7.07% | 6743 |
| chr18 | 2964404 | 3.69% | 3671 |
| chr19 | 3183131 | 5.43% | 4187 |
| chr20 | 3287368 | 5.10% | 3828 |
| chr21 | 1932506 | 4.14% | 2194 |
| chr22 | 2366309 | 4.66% | 2677 |
| chrX | 2301032 | 1.47% | 3449 |
| 3343 contigs with no values (186304500 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 168999 | 175 | 16291 | 855.1 | 653 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF428WDD.bed.gz | 4.02 MB | 5e63c3e81113eebbe5473ab128150bec |
| ENCFF428WDD.tabix.bed.gz | 1.75 MB | 07d68b53db3c86fab1d3db8d2077c5cd |
| ENCFF428WDD.tabix.bed.gz.tbi | 386.93 KB | 41efe5a6f2a55ebd762694ff26aa4603 |
| genomic_resource.yaml | 2.7 KB | a98f70ec3d050c3e1f41a082c9af06ab |
| statistics/ |