type: position_score
table:
  filename: ENCFF428WDD.tabix.bed.gz
  header_mode: none
  zero_based: true
  format: tabix
  chrom:
    column_index: 0
  pos_begin:
    column_index: 1
  pos_end:
    column_index: 2
scores:
- id: Histone_ChIP-seq_ENCSR023MFG
  column_index: 3
  type: float
  desc: signal
  histogram:
    type: number
    number_of_bins: 100
meta:
  summary: 'ChIP-seq ENCSR023MFG [TISSUE: Homo sapiens skeletal muscle satellite cell
    female adult originated from mesodermal cell, TARGET: H3K4me1]'
  description: '**status**: released


    **biological\_replicates**: Rep 1, Rep 3


    **summary**: female adult


    **output\_type**: replicated peaks


    **audit\_internal\_action**: Archived analysis {ENCAN989MDJ|/analyses/ENCAN989MDJ/}
    has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/}


    **audit\_not\_compliant**: Processed redacted alignments file {ENCFF647TSZ|/files/ENCFF647TSZ/}
    processed by ChIP-seq ENCODE3 hg19 pipeline has 17274025 usable fragments. The
    minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting
    H3K4me1-human and investigated as a broad histone mark is 20 million usable fragments.
    The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE
    ChIP-seq data standards|/data-standards/chip-seq/})


    **audit\_not\_compliant**: Processed redacted alignments file {ENCFF367QMK|/files/ENCFF367QMK/}
    processed by ChIP-seq ENCODE3 hg19 pipeline has 21770509 usable fragments. The
    minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting
    H3K4me1-human and investigated as a broad histone mark is 20 million usable fragments.
    The recommended value is > 45 million, but > 35 million is acceptable. (See {ENCODE
    ChIP-seq data standards|/data-standards/chip-seq/})'
  labels:
    reference_genome: hg38/genomes/GRCh38-hg38
    accession: ENCSR023MFG
    status: released
    assay_term_name: ChIP-seq
    simple_biosample_summary: female adult
    biosample_summary: Homo sapiens skeletal muscle satellite cell female adult originated
      from mesodermal cell
    replication_type: isogenic
    biosample_ontology: /biosample-types/primary_cell_CL_0000594/
    perturbed: false
    doi: 10.17989/ENCSR023MFG
    date_created: '2015-09-15T19:48:40.895302+00:00'
    date_released: '2013-07-31'
    submitter_comment: Experiment 80be0de3-2e2d-4b3a-9b69-951ba428b05e merged into
      base. Experiment 343e113b-f88b-478f-8879-0eafa102c7c1 merged into base.
    target: H3K4me1
