Histone_ChIP-seq_ENCSR021HLX
Histone_ChIP-seq ENCSR021HLX [biosample_summary="Homo sapiens neuronal stem cell originated from H9" and target="H2AFZ"]
×
| Id: | Histone_ChIP-seq/ENCSR021HLX |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR021HLX [biosamplesummary="Homo sapiens neuronal stem cell originated from H9" and target="H2AFZ"] |
| Description: |
status: released biological_replicates: Rep 2 summary: female embryo (5 days) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN059UCC|/analyses/ENCAN059UCC/} has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/} audit_internal_action: Released analysis {ENCAN059UCC|/analyses/ENCAN059UCC/} has in progress subobject document {f98e430e-cf5c-4307-99e6-000b019569e3|/documents/f98e430e-cf5c-4307-99e6-000b019569e3/} audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF066VHC|/files/ENCFF066VHC/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC1 value of 0.82. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF066VHC|/files/ENCFF066VHC/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library with PBC2 value of 5.56. |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR021HLX | float |
Histone_ChIP-seq_ENCSR021HLX |
Histone_ChIP-seq ENCSR021HLX [biosample_summary="Homo sapiens neuronal stem cell originated from H9" and target="H2AFZ"]
|
|
[1.66, 43.7] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF706NCG.bed.gz | 2.84 MB | e689393fc5dfd695b34d566342fe4fdb |
| ENCFF706NCG.bed.gz.dvc | 101.0 B | 7cc32f375bb4230f1c756511545c5af3 |
| ENCFF706NCG.tabix.bed.gz | 1.23 MB | fe1a65fcf32bfa25f7425f49c4dba5e9 |
| ENCFF706NCG.tabix.bed.gz.dvc | 107.0 B | e002f5f46413e5235753f1a2a33363e3 |
| ENCFF706NCG.tabix.bed.gz.tbi | 434.82 KB | 8d2120f8bc70b8cb3b4177f42c09a010 |
| ENCFF706NCG.tabix.bed.gz.tbi.dvc | 110.0 B | 20364796df9b1874517ab7793337a607 |
| genomic_resource.yaml | 3.11 KB | d790335934e0fba9ad9c6c7590afc0b1 |
| genomic_resource_original.yaml | 2.98 KB | 3cf517f1d0397cc5144568ec2160c6c4 |
| statistics/ |