type: position_score
table:
  filename: ENCFF706NCG.tabix.bed.gz
  header_mode: none
  zero_based: true
  format: tabix
  chrom:
    column_index: 0
  pos_begin:
    column_index: 1
  pos_end:
    column_index: 2
scores:
- id: Histone_ChIP-seq_ENCSR021HLX
  column_index: 3
  type: float
  desc: 'Histone_ChIP-seq ENCSR021HLX [biosample_summary="Homo sapiens neuronal stem cell originated from H9" and target="H2AFZ"]'
  histogram:
    type: number
    number_of_bins: 100
meta:
  summary: 'Histone_ChIP-seq ENCSR021HLX [biosample_summary="Homo sapiens neuronal stem cell originated from H9" and target="H2AFZ"]'
  description: '**status**: released


    **biological\_replicates**: Rep 2


    **summary**: female embryo (5 days)


    **output\_type**: pseudoreplicated peaks


    **audit\_internal\_action**: Released analysis {ENCAN059UCC|/analyses/ENCAN059UCC/}
    has in progress subobject quality standard {encode4-histone-chip|/quality-standards/encode4-histone-chip/}


    **audit\_internal\_action**: Released analysis {ENCAN059UCC|/analyses/ENCAN059UCC/}
    has in progress subobject document {f98e430e-cf5c-4307-99e6-000b019569e3|/documents/f98e430e-cf5c-4307-99e6-000b019569e3/}


    **audit\_warning**: PBC1 (PCR Bottlenecking Coefficient 1, M1/M\_distinct) is
    the ratio of the number of genomic locations where exactly one read maps uniquely
    (M1) to the number of genomic locations where some reads map (M\_distinct). A
    PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate
    bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking.
    PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments
    file {ENCFF066VHC|/files/ENCFF066VHC/} processed by ChIP-seq ENCODE4 v1.6.1 GRCh38
    pipeline was generated from a library with PBC1 value of 0.82.


    **audit\_warning**: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio
    of the number of genomic locations where exactly one read maps uniquely (M1) to
    the number of genomic locations where two reads map uniquely (M2). A PBC2 value
    in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3
    - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended,
    but > 3 is acceptable. ENCODE processed alignments file {ENCFF066VHC|/files/ENCFF066VHC/}
    processed by ChIP-seq ENCODE4 v1.6.1 GRCh38 pipeline was generated from a library
    with PBC2 value of 5.56.'
  labels:
    reference_genome: hg38/genomes/GRCh38-hg38
    accession: ENCSR021HLX
    status: released
    assay_term_name: ChIP-seq
    simple_biosample_summary: female embryo (5 days)
    biosample_summary: Homo sapiens neuronal stem cell originated from H9
    replication_type: unreplicated
    biosample_ontology: /biosample-types/in_vitro_differentiated_cells_CL_0000047/
    perturbed: false
    doi: 10.17989/ENCSR021HLX
    date_created: '2015-09-15T19:47:03.858518+00:00'
    date_released: '2013-07-31'
    submitter_comment: As of July 10th, 2017, this control and all its downstream
      experiments must be rerun to correct for proper replicate structure.
    target: H2AFZ
