Resource
| Id | Histone_ChIP-seq/ENCSR016JWS |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | Histone_ChIP-seq ENCSR016JWS [biosample_summary="Homo sapiens mammary epithelial cell female adult (50 years)" and target="H3K4me3"] |
| Description |
status: released biological_replicates: Rep 1, Rep 2 summary: female adult (50 years) output_type: replicated peaks audit_internal_action: Archived analysis {ENCAN177IOU|/analyses/ENCAN177IOU/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF944KRW|/files/ENCFF944KRW/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC2 value of 9.99. |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR016JWS | float |
Histone_ChIP-seq_ENCSR016JWS |
Histone_ChIP-seq ENCSR016JWS [biosample_summary="Homo sapiens mammary epithelial cell female adult (50 years)" and target="H3K4me3"]
|
 |
[1.58, 24.8] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 34748522 | 1.08% | 28839 |
| chr1 | 3390017 | 1.36% | 2733 |
| chr2 | 2478809 | 1.02% | 2042 |
| chr3 | 2137238 | 1.08% | 1733 |
| chr4 | 1705014 | 0.90% | 1399 |
| chr5 | 1752841 | 0.97% | 1361 |
| chr6 | 2237131 | 1.31% | 1777 |
| chr7 | 1666807 | 1.05% | 1424 |
| chr8 | 1367940 | 0.94% | 1144 |
| chr9 | 1413933 | 1.02% | 1198 |
| chr10 | 1541158 | 1.15% | 1295 |
| chr11 | 1794088 | 1.33% | 1446 |
| chr12 | 1926096 | 1.45% | 1514 |
| chr13 | 766177 | 0.67% | 650 |
| chr14 | 1126391 | 1.05% | 938 |
| chr15 | 1095469 | 1.07% | 916 |
| chr16 | 1230970 | 1.36% | 1065 |
| chr17 | 1737698 | 2.09% | 1480 |
| chr17_GL000205v2_random | 2675 | 1.44% | 3 |
| chr18 | 675548 | 0.84% | 573 |
| chr19 | 1853133 | 3.16% | 1657 |
| chr20 | 831179 | 1.29% | 691 |
| chr21 | 354768 | 0.76% | 291 |
| chr22 | 652293 | 1.28% | 568 |
| chrUn_GL000195v1 | 445 | 0.24% | 1 |
| chrUn_GL000219v1 | 1755 | 0.98% | 3 |
| chrUn_KI270466v1 | 517 | 41.93% | 1 |
| chrUn_KI270467v1 | 1986 | 50.66% | 2 |
| chrX | 1006446 | 0.64% | 934 |
| 3338 contigs with no values (185751662 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 28839 | 210 | 10075 | 1204.91 | 865 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF104HWT.bed.gz | 784.21 KB | 599cef7f5f0e34c130f4e8ac97350d80 |
| ENCFF104HWT.tabix.bed.gz | 329.55 KB | 1a8d88c5941ab30b312d2caf100aab75 |
| ENCFF104HWT.tabix.bed.gz.tbi | 160.97 KB | 502a670cb2ceb97a547595cf11e31e07 |
| genomic_resource.yaml | 2.14 KB | 268fd4f1ae9795e9ee0f13d5692dc2f9 |
| statistics/ |