Histone_ChIP-seq_ENCSR016JWS
Histone_ChIP-seq ENCSR016JWS [biosample_summary="Homo sapiens mammary epithelial cell female adult (50 years)" and target="H3K4me3"]
×
| Id: | Histone_ChIP-seq/ENCSR016JWS |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR016JWS [biosamplesummary="Homo sapiens mammary epithelial cell female adult (50 years)" and target="H3K4me3"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: female adult (50 years) output_type: replicated peaks audit_internal_action: Archived analysis {ENCAN177IOU|/analyses/ENCAN177IOU/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF944KRW|/files/ENCFF944KRW/} processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with PBC2 value of 9.99. |
| Labels: |
|
| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR016JWS | float |
Histone_ChIP-seq_ENCSR016JWS |
Histone_ChIP-seq ENCSR016JWS [biosample_summary="Homo sapiens mammary epithelial cell female adult (50 years)" and target="H3K4me3"]
|
|
[1.58, 24.8] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF104HWT.bed.gz | 784.21 KB | 599cef7f5f0e34c130f4e8ac97350d80 |
| ENCFF104HWT.bed.gz.dvc | 100.0 B | 285663a20aafd12e982ea981325d4164 |
| ENCFF104HWT.tabix.bed.gz | 329.55 KB | 1a8d88c5941ab30b312d2caf100aab75 |
| ENCFF104HWT.tabix.bed.gz.dvc | 106.0 B | 88fdfb331105f0d873f7d220683b751a |
| ENCFF104HWT.tabix.bed.gz.tbi | 160.97 KB | 502a670cb2ceb97a547595cf11e31e07 |
| ENCFF104HWT.tabix.bed.gz.tbi.dvc | 110.0 B | 3acb20219ea6dcdf8be7cfcc172a2d58 |
| genomic_resource.yaml | 2.14 KB | 268fd4f1ae9795e9ee0f13d5692dc2f9 |
| genomic_resource_original.yaml | 1.99 KB | 3f0622c891ab48efaea1ed1e1b6678ed |
| statistics/ |