type: position_score
table:
  filename: ENCFF104HWT.tabix.bed.gz
  header_mode: none
  zero_based: true
  format: tabix
  chrom:
    column_index: 0
  pos_begin:
    column_index: 1
  pos_end:
    column_index: 2
scores:
- id: Histone_ChIP-seq_ENCSR016JWS
  column_index: 3
  type: float
  desc: 'Histone_ChIP-seq ENCSR016JWS [biosample_summary="Homo sapiens mammary epithelial cell female adult (50 years)" and target="H3K4me3"]'
  histogram:
    type: number
    number_of_bins: 100
meta:
  summary: 'Histone_ChIP-seq ENCSR016JWS [biosample_summary="Homo sapiens mammary epithelial cell female adult (50 years)" and target="H3K4me3"]'
  description: '**status**: released


    **biological\_replicates**: Rep 1, Rep 2


    **summary**: female adult (50 years)


    **output\_type**: replicated peaks


    **audit\_internal\_action**: Archived analysis {ENCAN177IOU|/analyses/ENCAN177IOU/}
    has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/}


    **audit\_warning**: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio
    of the number of genomic locations where exactly one read maps uniquely (M1) to
    the number of genomic locations where two reads map uniquely (M2). A PBC2 value
    in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3
    - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended,
    but > 3 is acceptable. ENCODE processed alignments file {ENCFF944KRW|/files/ENCFF944KRW/}
    processed by ChIP-seq ENCODE3 GRCh38 pipeline was generated from a library with
    PBC2 value of 9.99.'
  labels:
    reference_genome: hg38/genomes/GRCh38-hg38
    accession: ENCSR016JWS
    status: released
    assay_term_name: ChIP-seq
    simple_biosample_summary: female adult (50 years)
    biosample_summary: Homo sapiens mammary epithelial cell female adult (50 years)
    replication_type: isogenic
    biosample_ontology: /biosample-types/primary_cell_CL_0002327/
    perturbed: false
    doi: 10.17989/ENCSR016JWS
    date_created: '2014-10-24T16:23:25.790885+00:00'
    date_released: '2016-11-17'
    submitter_comment: ''
    target: H3K4me3
