Histone_ChIP-seq_ENCSR000ANU
Histone_ChIP-seq ENCSR000ANU [biosample_summary="Homo sapiens myotube originated from skeletal muscle myoblast" and target="H2AFZ"]
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| Id: | Histone_ChIP-seq/ENCSR000ANU |
| Type: | position_score |
| Version: | 0 |
| Summary: |
HistoneChIP-seq ENCSR000ANU [biosamplesummary="Homo sapiens myotube originated from skeletal muscle myoblast" and target="H2AFZ"] |
| Description: |
status: released biological_replicates: Rep 1, Rep 2 summary: male adult (22 years) output_type: replicated peaks audit_internal_action: Archived analysis {ENCAN475IFK|/analyses/ENCAN475IFK/} has in progress subobject quality standard {encode3-histone-chip|/quality-standards/encode3-histone-chip/} audit_warning: Processed alignments file {ENCFF494ATJ|/files/ENCFF494ATJ/} processed by ChIP-seq ENCODE3 hg19 pipeline has 10831807 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H2AFZ-human and investigated as a narrow histone mark is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_warning: Processed alignments file {ENCFF552VOM|/files/ENCFF552VOM/} processed by ChIP-seq ENCODE3 hg19 pipeline has 14717385 usable fragments. The minimum ENCODE standard for each replicate in a ChIP-seq experiment targeting H2AFZ-human and investigated as a narrow histone mark is 10 million usable fragments. The recommended value is > 20 million, but > 10 million is acceptable. (See {ENCODE ChIP-seq data standards|/data-standards/chip-seq/}) audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.8 is acceptable. ENCODE processed alignments file {ENCFF494ATJ|/files/ENCFF494ATJ/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC1 value of 0.85. audit_warning: PBC2 (PCR Bottlenecking Coefficient 2, M1/M2) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where two reads map uniquely (M2). A PBC2 value in the range 0 - 1 is severe bottlenecking, 1 - 3 is moderate bottlenecking, 3 - 10 is mild bottlenecking, > 10 is no bottlenecking. PBC2 value > 10 is recommended, but > 3 is acceptable. ENCODE processed alignments file {ENCFF494ATJ|/files/ENCFF494ATJ/} processed by ChIP-seq ENCODE3 hg19 pipeline was generated from a library with PBC2 value of 6.56. |
| Labels: |
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| ID | Type | Default annotation | Description | Histogram | Range |
|---|---|---|---|---|---|
| Histone_ChIP-seq_ENCSR000ANU | float |
Histone_ChIP-seq_ENCSR000ANU |
Histone_ChIP-seq ENCSR000ANU [biosample_summary="Homo sapiens myotube originated from skeletal muscle myoblast" and target="H2AFZ"]
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[1.7, 44.2] |
| Filename | Size | md5 |
|---|---|---|
| ENCFF385WZD.bed.gz | 2.02 MB | 68777eb1726ad71930edd7fe68648a6a |
| ENCFF385WZD.bed.gz.dvc | 101.0 B | 91d032125674913e9e53d329a74d36e4 |
| ENCFF385WZD.tabix.bed.gz | 932.65 KB | 7f399a693f424e5c914f9f07ca96f571 |
| ENCFF385WZD.tabix.bed.gz.dvc | 106.0 B | 6b9ccecca279ef7e2b54acc806542b52 |
| ENCFF385WZD.tabix.bed.gz.tbi | 371.02 KB | 55d16cb263a0ddf11ec0537fd7a57fca |
| ENCFF385WZD.tabix.bed.gz.tbi.dvc | 110.0 B | f9ba964853f190cad677333cfe4fcc20 |
| genomic_resource.yaml | 3.73 KB | 1543efa0dae242f7a87c97db3bc6a4f8 |
| genomic_resource_original.yaml | 3.58 KB | ec02268be82f9b6aaea9f561ba241f2b |
| statistics/ |